Miyakogusa Predicted Gene

Lj5g3v1315660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1315660.1 Non Chatacterized Hit- tr|K4AJZ1|K4AJZ1_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,65.67,1e-16,ARE1-LIKE PROTEIN,NULL; SUPPRESSOR OF ACTIN MUTATIONS
2/VACUOLAR PROTEIN SORTING 52,Vps52/Sac2,FS355688.path1.1
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71270.1 | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family ...   125   9e-30
AT1G71300.1 | Symbols:  | Vps52 / Sac2 family  | chr1:26874064-2...   110   2e-25

>AT1G71270.1 | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family  |
           chr1:26863736-26869817 FORWARD LENGTH=707
          Length = 707

 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 64/67 (95%)

Query: 1   MHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEI 60
           M KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+DCIK+I GGSALN+DLVSI SIMYEI
Sbjct: 641 MDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 700

Query: 61  RKYSRTF 67
           RKYS+TF
Sbjct: 701 RKYSKTF 707


>AT1G71300.1 | Symbols:  | Vps52 / Sac2 family  |
           chr1:26874064-26878319 FORWARD LENGTH=721
          Length = 721

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 59/67 (88%)

Query: 1   MHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEI 60
           MHKD+IT FSNFLCGM+IL A +TQLLLYYTRL DCIK+I GGSALN+D+V+  SIM+EI
Sbjct: 655 MHKDIITCFSNFLCGMDILIAGMTQLLLYYTRLEDCIKKIDGGSALNRDIVNYQSIMFEI 714

Query: 61  RKYSRTF 67
           +KY +TF
Sbjct: 715 KKYKKTF 721