Miyakogusa Predicted Gene

Lj5g3v1314600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1314600.1 Non Chatacterized Hit- tr|C6TFN8|C6TFN8_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,88.66,0,S1,Ribosomal protein S1, RNA-binding domain; EXOSC1,Exosome
complex component CSL4; ECR1_N,Exosome c,CUFF.55140.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38890.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   285   1e-77

>AT5G38890.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr5:15569507-15570898 FORWARD LENGTH=191
          Length = 191

 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/189 (71%), Positives = 160/189 (84%), Gaps = 2/189 (1%)

Query: 8   MVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEVTGHKA 67
           +VTPG+V+G++++ K G+GAY   ++ T+YASLTG  R   P P+S DQR  VEVTGHKA
Sbjct: 5   LVTPGDVIGKATEFKAGKGAYV--NDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKA 62

Query: 68  HGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVEMHL 127
           HGP+P+ GSVVIARVTKVM + A+ DI+CVG K+VRE F G+IRQQDVRATEIDKV+MH 
Sbjct: 63  HGPIPETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQ 122

Query: 128 SFRPGDIVKALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPISWTEMQCPLTGQIE 187
           SF  GDIV+A+VLSLGDARAY+LSTAKNELGVVSAES AG TMVPISWTEMQCPL+GQ E
Sbjct: 123 SFHAGDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAAGETMVPISWTEMQCPLSGQTE 182

Query: 188 QRKVAKVAS 196
           QRKVAKV +
Sbjct: 183 QRKVAKVGN 191