Miyakogusa Predicted Gene

Lj5g3v1314590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1314590.1 Non Chatacterized Hit- tr|Q9FHS9|Q9FHS9_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,62.5,0.000000000003,seg,NULL,CUFF.55144.1
         (310 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37360.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   331   3e-91

>AT5G37360.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 1807
           Blast hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:14805437-14808113 REVERSE LENGTH=309
          Length = 309

 Score =  331 bits (849), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/261 (65%), Positives = 206/261 (78%), Gaps = 3/261 (1%)

Query: 52  KPLTVCFALTEPNSPKSLD---PDPQSLLQEIADSFDLPSDYFSQFPSDLRLDLNDAAFD 108
           K LT+ FALTE +S K L+   P  +SLL +++  FDLPSDYF Q P+DLRLDLNDAAFD
Sbjct: 48  KSLTLRFALTESDSTKPLEIEEPSSKSLLLQLSKCFDLPSDYFQQLPNDLRLDLNDAAFD 107

Query: 109 LSNGPVLDECGQELGQTLLNLSRAWELADTSTSHSLVAKLPLLEANLTGTAKSALGKRLV 168
           LSNGPV+DECGQELG+TLLNLSRAWE ADTSTS SLV KLP LE  LT  A+SA GKRL+
Sbjct: 108 LSNGPVIDECGQELGETLLNLSRAWEQADTSTSRSLVEKLPELEILLTDGARSAFGKRLI 167

Query: 169 SAGRRFQSMGQYGQGEPQKIAKAMIAAGRVLSASSTSAVIDEQPKEETRMLKFGDLQVEV 228
           SAG+RFQ MGQY +GE QKIAKAMI  G VLSA ++S  +  + K  TRM KFG+LQV V
Sbjct: 168 SAGKRFQGMGQYAKGELQKIAKAMITTGGVLSAKTSSVSVSNESKSGTRMFKFGELQVAV 227

Query: 229 TLEKAIIGAVIGTIFGVLSWEIAQGIQSVPESSSQYANDSAFALAKSLRGALISLFYAST 288
           T EKA  GA I  I+G+LSW+I+QGIQS+PE+S QYAND+A  + KSLRG+L++LFYAST
Sbjct: 228 TPEKAYTGAAIAFIYGILSWQISQGIQSIPENSLQYANDNALLIGKSLRGSLLALFYAST 287

Query: 289 LLSASTSVGLVLLAIQLKSKK 309
           +LS  T+ GL+LLA QL S+K
Sbjct: 288 VLSGFTTAGLILLAKQLSSEK 308