Miyakogusa Predicted Gene

Lj5g3v1301250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1301250.1 tr|B9IQ06|B9IQ06_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_780402 PE=4
SV=1,43.14,2e-16,seg,NULL,CUFF.55120.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G36100.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   1e-14
AT1G65090.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   4e-14
AT1G65090.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    72   6e-14

>AT5G36100.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G65090.3); Has 57 Blast hits to 49 proteins in
           15 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi
           - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8
           (source: NCBI BLink). | chr5:14191711-14193654 REVERSE
           LENGTH=295
          Length = 295

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 27  SQELVFDEGNVWKQINAIRKIIGYEGTAQASCADELKALYIFTGVEPPTFLKQNLCDPAE 86
           S  +++ E  +W +I A+RK++GY  T   + ++ELKALY+FTGVE PT   +N  D A+
Sbjct: 222 STTVLYSEEQIWTKIEALRKVVGYNVTRSTTYSEELKALYMFTGVELPTSTLEN-QDIAK 280

Query: 87  INEKLHFLMSIVGIK 101
           ++E L FLMS++GIK
Sbjct: 281 VSEGLSFLMSVIGIK 295


>AT1G65090.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G36100.1). |
           chr1:24180973-24182668 REVERSE LENGTH=288
          Length = 288

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 31  VFDEGNVWKQINAIRKIIGYEGTAQASCADELKALYIFTG-VEPP-TFLKQNLCDPAEIN 88
           V+ E  +W+ +  +RK++GY     A+CA+ELKALY+FTG VEPP + L Q+  D A + 
Sbjct: 216 VYSEEQLWETMETLRKVVGYSVARSATCAEELKALYVFTGVVEPPRSSLNQDTYDIAHLT 275

Query: 89  EKLHFLMSIVGI 100
            +L FLMS++GI
Sbjct: 276 IRLRFLMSVIGI 287


>AT1G65090.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G36100.1);
           Has 1234 Blast hits to 904 proteins in 178 species:
           Archae - 0; Bacteria - 58; Metazoa - 431; Fungi - 95;
           Plants - 83; Viruses - 38; Other Eukaryotes - 529
           (source: NCBI BLink). | chr1:24180973-24182668 REVERSE
           LENGTH=379
          Length = 379

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 31  VFDEGNVWKQINAIRKIIGYEGTAQASCADELKALYIFTG-VEPP-TFLKQNLCDPAEIN 88
           V+ E  +W+ +  +RK++GY     A+CA+ELKALY+FTG VEPP + L Q+  D A + 
Sbjct: 307 VYSEEQLWETMETLRKVVGYSVARSATCAEELKALYVFTGVVEPPRSSLNQDTYDIAHLT 366

Query: 89  EKLHFLMSIVGI 100
            +L FLMS++GI
Sbjct: 367 IRLRFLMSVIGI 378