Miyakogusa Predicted Gene

Lj5g3v1259870.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1259870.2 Non Chatacterized Hit- tr|I1NIH7|I1NIH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25509
PE,64.04,0,seg,NULL; PHD zinc finger,Zinc finger, PHD-type; no
description,Zinc finger, RING/FYVE/PHD-type; OS0,CUFF.55160.2
         (1172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32810.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   224   2e-58
AT4G10600.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   186   1e-46
AT1G33420.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    56   2e-07
AT2G01810.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    56   2e-07
AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfam...    50   9e-06

>AT1G32810.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
            protein | chr1:11881810-11885843 FORWARD LENGTH=1068
          Length = 1068

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 183/349 (52%), Gaps = 65/349 (18%)

Query: 778  QNKISSVPPKVEKANQTNIHSSSKSNQNHXXXXXXXXXXXXXMLSDEELALLLHQELNXX 837
            ++ +S   PK EK  Q+   SS+K+                  LSDEELAL LH +LN  
Sbjct: 679  KHSLSGTFPKNEKPGQSIFQSSTKN-------PVQSIISLAPNLSDEELALRLHHQLNSS 731

Query: 838  XXXXXXXXARNTGSLPQLNSTSATSMLMKRTTSAGGKDHYLVSRRKYKDASRDGFCSSRE 897
                     R  GSLP     S T+   KRT+S+G KDH   SRRK KD S++G+C+ R+
Sbjct: 732  PRVPRVPRMRQPGSLP----LSPTAPSFKRTSSSGSKDHTTFSRRKNKDTSKEGYCNLRD 787

Query: 898  PEDEAKIEKEKGPSSSDQRKQNMECVEDTSVKEGGHASVIASNTITNNVVSATSAIA--- 954
             +D       K   S D+R Q     +D+  + G   S    N  T     ++  +    
Sbjct: 788  -DDRCSTRSAKNRRSPDRRTQ-----QDSGSRGGSLCSKGEENETTKTSSYSSRKVLLPP 841

Query: 955  --------------------NSSPHSPSEEQSFSLIRNSPRNISDDDTATAGRPVHHTLP 994
                                  SPHS            SPRN         G PVH TLP
Sbjct: 842  NSTTSTSSGPCSSSELNEHNKPSPHS------------SPRN--------NGTPVHRTLP 881

Query: 995  GLINDIMSSGKRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRHEWARLV 1054
            GLIN+IM+ GKRM YEELCNAVLPHW +LRKHNGERYAYSSHSQAVLDCLRNRHEWARLV
Sbjct: 882  GLINEIMNKGKRMAYEELCNAVLPHWPHLRKHNGERYAYSSHSQAVLDCLRNRHEWARLV 941

Query: 1055 DRGPKTNTNRKRRKLDA--EESDDSGYGKGRTAKEVEGKNFELQKEEFP 1101
            DRGPKTN+ +K+RKLDA  E+SD++   KG   +  +      Q EEFP
Sbjct: 942  DRGPKTNSGKKKRKLDAAEEDSDENESSKGGRKRLHQ---HHSQGEEFP 987


>AT4G10600.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr4:6547934-6548647 REVERSE LENGTH=237
          Length = 237

 Score =  186 bits (471), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 123/219 (56%), Gaps = 47/219 (21%)

Query: 13  PPDDWVDGSWTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFSCDKCXXXXX 72
           P +DWV  SWTVDCVCGV FDDG+EMV CDECGVWVHT CSRYVKGDD F C KC     
Sbjct: 3   PHEDWVYESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDLFVCHKCKIK-- 60

Query: 73  XXXXXXXXXXXXXRVDRITEETEVAQLLIELPTKTMSMEKXXXXXXXXXXXXXXXXXKVV 132
                               E E+++L +   TK++ ME                     
Sbjct: 61  ------------------NNEDELSKLSV---TKSLRMENL-----------------CT 82

Query: 133 ASRSRRPFKLWAEKPMEEKVHVQGIPGGDPSLFAGKAVPSIFGPQLWKCTGYVPKKFNFQ 192
            S      K  +E P+EE+VHVQG+PGGD  LF  + V S+F  QLWKC+GYVPKKF FQ
Sbjct: 83  QSSESVVLKACSEIPIEERVHVQGVPGGDLGLF--ECVSSVFSRQLWKCSGYVPKKFRFQ 140

Query: 193 YREFPYWDDEKKN----EGTQENDNGAGVLFSFSKETSA 227
            REFP W DEK+N     G +++ N AGVL S SKE   
Sbjct: 141 CREFPCW-DEKENVCDVVGDEDDSNLAGVLLSMSKENGV 178


>AT1G33420.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:12121063-12123346 REVERSE LENGTH=697
          Length = 697

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDT---FSCDKC 67
           W VDC CG   DDGE M+ CD CGVW HTRC      D     F C +C
Sbjct: 602 WKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 650


>AT2G01810.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:347537-349952 FORWARD LENGTH=697
          Length = 697

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDD----TFSCDKC 67
           WTVDC CG   DDGE MV CD C VW HT C+  ++ D+     F C+ C
Sbjct: 634 WTVDCKCGARDDDGERMVACDACKVWHHTLCNS-IEDDEAVPSVFLCNMC 682


>AT1G66170.1 | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:24638793-24641222 REVERSE LENGTH=704
          Length = 704

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 21  SWTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDT----FSCDKC 67
           +W V C+C    DDGE M+ CD C VW HTRC   +   DT    F C  C
Sbjct: 604 TWMVKCICRARDDDGERMISCDVCEVWQHTRCCG-IDDSDTLPPLFVCSNC 653