Miyakogusa Predicted Gene

Lj5g3v1237800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1237800.1 Non Chatacterized Hit- tr|K3Y583|K3Y583_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009371,40.52,9e-17,seg,NULL; bHLH-MYC_N,Transcription factor
MYC/MYB N-terminal,CUFF.55087.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64625.2 | Symbols:  | Serine/threonine-protein kinase WNK (W...    87   3e-18
AT1G64625.1 | Symbols:  | Serine/threonine-protein kinase WNK (W...    79   7e-16
AT1G64625.3 | Symbols:  | Serine/threonine-protein kinase WNK (W...    74   3e-14
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...    67   3e-12
AT1G06150.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    67   4e-12
AT2G31280.3 | Symbols: CPUORF7 | conserved peptide upstream open...    64   2e-11
AT2G31280.1 | Symbols: CPUORF7 | conserved peptide upstream open...    64   2e-11
AT2G27230.2 | Symbols: LHW | transcription factor-related | chr2...    59   8e-10
AT2G27230.1 | Symbols: LHW | transcription factor-related | chr2...    59   8e-10
AT2G31280.2 | Symbols: CPUORF7 | conserved peptide upstream open...    55   1e-08
AT5G24352.1 | Symbols:  | Serine/threonine-protein kinase WNK (W...    49   1e-06

>AT1G64625.2 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=517
          Length = 517

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 12/124 (9%)

Query: 10  STLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVLPQMHLLGE 69
           S  ++ LK+LC   HGWSYAVFWR+ P NS++L              +  ++ Q  +LG+
Sbjct: 3   SEYKHILKSLC-LSHGWSYAVFWRYDPINSMILRFEEAYNDEQSVALVDDMVLQAPILGQ 61

Query: 70  GIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVV 129
           GIVGE A SG H W+ SD+  Q W    QN          QF  G KTI +IP+ + GVV
Sbjct: 62  GIVGEVASSGNHQWLFSDTLFQ-WEHEFQN----------QFLCGFKTIAIIPLGSSGVV 110

Query: 130 QFVS 133
           Q  S
Sbjct: 111 QLGS 114


>AT1G64625.1 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=527
          Length = 527

 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 22/134 (16%)

Query: 10  STLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVLPQMHLLGE 69
           S  ++ LK+LC   HGWSYAVFWR+ P NS++L              +  ++ Q  +LG+
Sbjct: 3   SEYKHILKSLC-LSHGWSYAVFWRYDPINSMILRFEEAYNDEQSVALVDDMVLQAPILGQ 61

Query: 70  GIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIK----------TIV 119
           GIVGE A SG H W+ SD+  Q W    QN          QF  G K          TI 
Sbjct: 62  GIVGEVASSGNHQWLFSDTLFQ-WEHEFQN----------QFLCGFKILIRQFTYTQTIA 110

Query: 120 VIPVKACGVVQFVS 133
           +IP+ + GVVQ  S
Sbjct: 111 IIPLGSSGVVQLGS 124


>AT1G64625.3 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr1:24016878-24019181 FORWARD
           LENGTH=503
          Length = 503

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 26/124 (20%)

Query: 10  STLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVLPQMHLLGE 69
           S  ++ LK+LC   HGWSYAVFWR+ P NS++L              +  ++ Q  +LG+
Sbjct: 3   SEYKHILKSLC-LSHGWSYAVFWRYDPINSMILRFEEAYNDEQSVALVDDMVLQAPILGQ 61

Query: 70  GIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIPVKACGVV 129
           GIVGE A SG H W+ SD+  Q                         TI +IP+ + GVV
Sbjct: 62  GIVGEVASSGNHQWLFSDTLFQ-------------------------TIAIIPLGSSGVV 96

Query: 130 QFVS 133
           Q  S
Sbjct: 97  QLGS 100


>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:1867129-1873194
           REVERSE LENGTH=1322
          Length = 1322

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 24/141 (17%)

Query: 11  TLRNKLKTLCSYEHGWSYAVFWRFHPRNSLML-------------IMXXXXXXXXXXXD- 56
           TL+  L+++CS    W+YAVFW+ +  + ++L             +M           D 
Sbjct: 4   TLQQILRSICS-NTDWNYAVFWKLNHHSPMVLTLEDVYCVNHERGLMPESLHGGRHAHDP 62

Query: 57  ----IAHVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFS 112
               +A +   +H LGEGIVG+ A SG+H W+ S     E+     +T +  +G   Q S
Sbjct: 63  LGLAVAKMSYHVHSLGEGIVGQVAISGQHQWIFS-----EYLNDSHSTLQVHNGWESQIS 117

Query: 113 NGIKTIVVIPVKACGVVQFVS 133
            GIKTI+++ V +CGVVQ  S
Sbjct: 118 AGIKTILIVAVGSCGVVQLGS 138


>AT1G06150.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:1869228-1873194 REVERSE
           LENGTH=734
          Length = 734

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 24/141 (17%)

Query: 11  TLRNKLKTLCSYEHGWSYAVFWRFHPRNSLML-------------IMXXXXXXXXXXXD- 56
           TL+  L+++CS    W+YAVFW+ +  + ++L             +M           D 
Sbjct: 4   TLQQILRSICS-NTDWNYAVFWKLNHHSPMVLTLEDVYCVNHERGLMPESLHGGRHAHDP 62

Query: 57  ----IAHVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFS 112
               +A +   +H LGEGIVG+ A SG+H W+ S     E+     +T +  +G   Q S
Sbjct: 63  LGLAVAKMSYHVHSLGEGIVGQVAISGQHQWIFS-----EYLNDSHSTLQVHNGWESQIS 117

Query: 113 NGIKTIVVIPVKACGVVQFVS 133
            GIKTI+++ V +CGVVQ  S
Sbjct: 118 AGIKTILIVAVGSCGVVQLGS 138


>AT2G31280.3 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339678-13343424 FORWARD
           LENGTH=737
          Length = 737

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 10  STLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXD-----------IA 58
           ST +  LK+ C +   W YAVFW+ + R S M++            +           +A
Sbjct: 3   STSQEILKSFC-FNTDWDYAVFWQLNHRGSRMVLTLEDAYYDHHGTNMHGAHDPLGLAVA 61

Query: 59  HVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGL-HQQFSNGIKT 117
            +   ++ LGEGIVG+ A SG+H WV  +      N+   N+  +   +   Q S GIKT
Sbjct: 62  KMSYHVYSLGEGIVGQVAVSGEHQWVFPE------NYNNCNSAFEFHNVWESQISAGIKT 115

Query: 118 IVVIPVKACGVVQFVS 133
           I+V+ V  CGVVQ  S
Sbjct: 116 ILVVAVGPCGVVQLGS 131


>AT2G31280.1 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339678-13343424 FORWARD
           LENGTH=720
          Length = 720

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 10  STLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXD-----------IA 58
           ST +  LK+ C +   W YAVFW+ + R S M++            +           +A
Sbjct: 3   STSQEILKSFC-FNTDWDYAVFWQLNHRGSRMVLTLEDAYYDHHGTNMHGAHDPLGLAVA 61

Query: 59  HVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGL-HQQFSNGIKT 117
            +   ++ LGEGIVG+ A SG+H WV  +      N+   N+  +   +   Q S GIKT
Sbjct: 62  KMSYHVYSLGEGIVGQVAVSGEHQWVFPE------NYNNCNSAFEFHNVWESQISAGIKT 115

Query: 118 IVVIPVKACGVVQFVS 133
           I+V+ V  CGVVQ  S
Sbjct: 116 ILVVAVGPCGVVQLGS 131


>AT2G27230.2 | Symbols: LHW | transcription factor-related |
           chr2:11650895-11653840 FORWARD LENGTH=650
          Length = 650

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)

Query: 12  LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVL---------- 61
           LR  L+++C   + WSYAVFW+   +NS +LI            +   +           
Sbjct: 5   LREALRSMC-VNNQWSYAVFWKIGCQNSSLLIWEECYNETESSSNPRRLCGLGVDTQGNE 63

Query: 62  ------------PQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQ 109
                        ++ L+GEG+VG AAF+G H W+ ++S  ++      +  E  + +  
Sbjct: 64  KVQLLTNRMMLNNRIILVGEGLVGRAAFTGHHQWILANSFNRDV-----HPPEVINEMLL 118

Query: 110 QFSNGIKTIVVIPVKACGVVQFVS 133
           QFS GI+T+ V PV   GVVQ  S
Sbjct: 119 QFSAGIQTVAVFPVVPHGVVQLGS 142


>AT2G27230.1 | Symbols: LHW | transcription factor-related |
           chr2:11650895-11653840 FORWARD LENGTH=650
          Length = 650

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)

Query: 12  LRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXDIAHVL---------- 61
           LR  L+++C   + WSYAVFW+   +NS +LI            +   +           
Sbjct: 5   LREALRSMC-VNNQWSYAVFWKIGCQNSSLLIWEECYNETESSSNPRRLCGLGVDTQGNE 63

Query: 62  ------------PQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQ 109
                        ++ L+GEG+VG AAF+G H W+ ++S  ++      +  E  + +  
Sbjct: 64  KVQLLTNRMMLNNRIILVGEGLVGRAAFTGHHQWILANSFNRDV-----HPPEVINEMLL 118

Query: 110 QFSNGIKTIVVIPVKACGVVQFVS 133
           QFS GI+T+ V PV   GVVQ  S
Sbjct: 119 QFSAGIQTVAVFPVVPHGVVQLGS 142


>AT2G31280.2 | Symbols: CPUORF7 | conserved peptide upstream open
           reading frame 7 | chr2:13339430-13343309 FORWARD
           LENGTH=723
          Length = 723

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 31/139 (22%)

Query: 6   EVSHSTLRNKLKTLCSYEHGWSYAVFWRFHPRNSLMLIMXXXXXXXXXXXD--------- 56
           +    + R  LK+ C +   W YAVFW+ + R S M++            +         
Sbjct: 25  QAGRGSYREILKSFC-FNTDWDYAVFWQLNHRGSRMVLTLEDAYYDHHGTNMHGAHDPLG 83

Query: 57  --IAHVLPQMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNG 114
             +A +   ++ LGEGIVG+ A SG+H WV  +      N+   N+              
Sbjct: 84  LAVAKMSYHVYSLGEGIVGQVAVSGEHQWVFPE------NYNNCNS-------------A 124

Query: 115 IKTIVVIPVKACGVVQFVS 133
            +TI+V+ V  CGVVQ  S
Sbjct: 125 FETILVVAVGPCGVVQLGS 143


>AT5G24352.1 | Symbols:  | Serine/threonine-protein kinase WNK (With
           No Lysine)-related | chr5:8311092-8311767 FORWARD
           LENGTH=79
          Length = 79

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 17/73 (23%)

Query: 63  QMHLLGEGIVGEAAFSGKHSWVHSDSQTQEWNFTGQNTTEDDSGLHQQFSNGIKTIVVIP 122
           Q   LG+GIVGE A +G H W+ SD+  Q                  QF +G KTI +IP
Sbjct: 4   QAPFLGQGIVGEVASTGNHQWLFSDTLFQN-----------------QFLSGFKTIAIIP 46

Query: 123 VKACGVVQFVSKR 135
           + + GVVQ  S +
Sbjct: 47  LGSSGVVQLGSTQ 59