Miyakogusa Predicted Gene

Lj5g3v1236750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1236750.1 Non Chatacterized Hit- tr|I0YWS9|I0YWS9_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.14,7e-18,coiled-coil,NULL; seg,NULL; cwf18,mRNA splicing factor,
Cwf18; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.55079.1
         (160 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: mRNA splic...   144   4e-35

>AT3G05070.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: mRNA splicing
           factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits
           to 292 proteins in 153 species: Archae - 0; Bacteria -
           0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11;
           Other Eukaryotes - 42 (source: NCBI BLink). |
           chr3:1416480-1417533 FORWARD LENGTH=144
          Length = 144

 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/153 (52%), Positives = 98/153 (64%), Gaps = 15/153 (9%)

Query: 1   MGSEEESIEQTVXXXXXXXXXXXXXXXXXNAPEAGTEPESAAANGNDDRDESPQEEQENL 60
           M SE+ESIEQ                    A  A  E      +G D+       E++  
Sbjct: 1   MASEDESIEQKAAARKEAL----------KALRAAQELSETKEDGEDE-----AVEEDGP 45

Query: 61  SMKFRNYVPHDKHLQEGKLAPAVLPKFEDPVAASAPEPHPQEDPFLNIAPKKPNWDLRRD 120
           +MKFRNYVP  K LQ+GKLAP  LPKFEDP+ A  P    +EDPF+NIAPKKPNWDLRRD
Sbjct: 46  AMKFRNYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRD 105

Query: 121 VQKKLDKLEKRTQKALYQLMVEQEKQKELAEGD 153
           VQKKLDKLE+RTQKA+++LM EQEK++E+AE D
Sbjct: 106 VQKKLDKLERRTQKAMHKLMEEQEKEREMAEAD 138