Miyakogusa Predicted Gene
- Lj5g3v1224660.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1224660.1 tr|Q01AC6|Q01AC6_OSTTA WGS project CAID00000000
data, contig chromosome 04 OS=Ostreococcus tauri
GN=,34.69,5e-19,seg,NULL,CUFF.55065.1
(159 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08450.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 197 3e-51
AT5G08450.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone de... 197 3e-51
AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone de... 197 3e-51
>AT5G08450.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Histone deacetylation protein Rxt3
(InterPro:IPR013951); Has 34444 Blast hits to 20801
proteins in 1175 species: Archae - 64; Bacteria - 2390;
Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses -
208; Other Eukaryotes - 10599 (source: NCBI BLink). |
chr5:2727970-2732572 REVERSE LENGTH=918
Length = 918
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 109/151 (72%), Gaps = 11/151 (7%)
Query: 17 VADKGLKKPLYTSARLKKGEVLYLETHKSRYELCFIGEKLVKATPASQLQ--------DP 68
VADKGLKKPL+TSARLKKGEVLYLETH RYELCF GEK +KA ASQ Q D
Sbjct: 771 VADKGLKKPLFTSARLKKGEVLYLETHSCRYELCFAGEKTIKAIQASQQQSSHEAMETDN 830
Query: 69 STDKSHNNHPHSANGEKSDGDHVMIDAFRWSRCKKPLPQKLMRTIGIXXXXXXXXXXXXX 128
+ +KS N H NG+K+D D+ +ID FRWSRCKKPLPQKLMR+IG
Sbjct: 831 NNNKSQN---HLTNGDKTDSDNSLIDVFRWSRCKKPLPQKLMRSIGFPLPADHIEVLEEN 887
Query: 129 XDWEDIQWSQTGVWVAGKEYTLARVHFLSMN 159
DWED+QWSQTGVW+AGKEYTLARVHFLS N
Sbjct: 888 LDWEDVQWSQTGVWIAGKEYTLARVHFLSPN 918
>AT5G08450.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has
30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:2727970-2732572
REVERSE LENGTH=918
Length = 918
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 109/151 (72%), Gaps = 11/151 (7%)
Query: 17 VADKGLKKPLYTSARLKKGEVLYLETHKSRYELCFIGEKLVKATPASQLQ--------DP 68
VADKGLKKPL+TSARLKKGEVLYLETH RYELCF GEK +KA ASQ Q D
Sbjct: 771 VADKGLKKPLFTSARLKKGEVLYLETHSCRYELCFAGEKTIKAIQASQQQSSHEAMETDN 830
Query: 69 STDKSHNNHPHSANGEKSDGDHVMIDAFRWSRCKKPLPQKLMRTIGIXXXXXXXXXXXXX 128
+ +KS N H NG+K+D D+ +ID FRWSRCKKPLPQKLMR+IG
Sbjct: 831 NNNKSQN---HLTNGDKTDSDNSLIDVFRWSRCKKPLPQKLMRSIGFPLPADHIEVLEEN 887
Query: 129 XDWEDIQWSQTGVWVAGKEYTLARVHFLSMN 159
DWED+QWSQTGVW+AGKEYTLARVHFLS N
Sbjct: 888 LDWEDVQWSQTGVWIAGKEYTLARVHFLSPN 918
>AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has
34444 Blast hits to 20801 proteins in 1175 species:
Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi -
3729; Plants - 1886; Viruses - 208; Other Eukaryotes -
10599 (source: NCBI BLink). | chr5:2727970-2732572
REVERSE LENGTH=918
Length = 918
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 109/151 (72%), Gaps = 11/151 (7%)
Query: 17 VADKGLKKPLYTSARLKKGEVLYLETHKSRYELCFIGEKLVKATPASQLQ--------DP 68
VADKGLKKPL+TSARLKKGEVLYLETH RYELCF GEK +KA ASQ Q D
Sbjct: 771 VADKGLKKPLFTSARLKKGEVLYLETHSCRYELCFAGEKTIKAIQASQQQSSHEAMETDN 830
Query: 69 STDKSHNNHPHSANGEKSDGDHVMIDAFRWSRCKKPLPQKLMRTIGIXXXXXXXXXXXXX 128
+ +KS N H NG+K+D D+ +ID FRWSRCKKPLPQKLMR+IG
Sbjct: 831 NNNKSQN---HLTNGDKTDSDNSLIDVFRWSRCKKPLPQKLMRSIGFPLPADHIEVLEEN 887
Query: 129 XDWEDIQWSQTGVWVAGKEYTLARVHFLSMN 159
DWED+QWSQTGVW+AGKEYTLARVHFLS N
Sbjct: 888 LDWEDVQWSQTGVWIAGKEYTLARVHFLSPN 918