Miyakogusa Predicted Gene

Lj5g3v1211580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1211580.1 Non Chatacterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X ...   261   3e-70
AT1G33360.1 | Symbols:  | ATP-dependent Clp protease | chr1:1209...   261   4e-70
AT5G49840.1 | Symbols:  | ATP-dependent Clp protease | chr5:2025...   228   3e-60

>AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X |
           chr5:21644060-21647503 FORWARD LENGTH=579
          Length = 579

 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/157 (83%), Positives = 138/157 (87%), Gaps = 1/157 (0%)

Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGS-GEDSKISEGK 181
           LG D PTPKEICKGL+KFVIGQ  AKKVLSVAVYNHYKRIY+ SSQ+ S GE    +   
Sbjct: 154 LGSDFPTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKP 213

Query: 182 DDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 241
            DDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL
Sbjct: 214 ADDDMVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 273

Query: 242 YKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
           YKLL  A++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 274 YKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNIS 310


>AT1G33360.1 | Symbols:  | ATP-dependent Clp protease |
           chr1:12092111-12095789 FORWARD LENGTH=656
          Length = 656

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 140/156 (89%), Gaps = 5/156 (3%)

Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKD 182
           LGRD PTPKEICK LDKFVIGQ+ AKKVLSVAVYNHYKRIY+ S ++GS      ++  D
Sbjct: 245 LGRDFPTPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGSA-----AQPID 299

Query: 183 DDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 242
           DDD+VEL+KSNVLLMGPTGSGKTLLAKTLAR VNVPFVIADATTLTQAGYVG+DVESIL+
Sbjct: 300 DDDNVELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILH 359

Query: 243 KLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
           KLL  AEFNVQAAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 360 KLLTVAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 395


>AT5G49840.1 | Symbols:  | ATP-dependent Clp protease |
           chr5:20255243-20259035 FORWARD LENGTH=608
          Length = 608

 Score =  228 bits (582), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 130/151 (86%), Gaps = 1/151 (0%)

Query: 127 LPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKDDD-D 185
           LPTPKEIC+GLD+FVIGQ  AKKVLSVAVYNHYKRIY+AS ++GS  +S   + +DD+ D
Sbjct: 197 LPTPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNID 256

Query: 186 HVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 245
           HVEL+KSNVLL+GPTGSGKTLLAKTLAR VNVPF IADAT+LTQA YVGEDVESILYKL 
Sbjct: 257 HVELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQASYVGEDVESILYKLY 316

Query: 246 VAAEFNVQAAQQGIVYIDEVDKITKKAESLN 276
           V A  NV+ AQ+GIVYIDEVDK+T K+ S N
Sbjct: 317 VEAGCNVEEAQRGIVYIDEVDKMTMKSHSSN 347