Miyakogusa Predicted Gene
- Lj5g3v1211580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1211580.1 Non Chatacterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
(278 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X ... 261 3e-70
AT1G33360.1 | Symbols: | ATP-dependent Clp protease | chr1:1209... 261 4e-70
AT5G49840.1 | Symbols: | ATP-dependent Clp protease | chr5:2025... 228 3e-60
>AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X |
chr5:21644060-21647503 FORWARD LENGTH=579
Length = 579
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGS-GEDSKISEGK 181
LG D PTPKEICKGL+KFVIGQ AKKVLSVAVYNHYKRIY+ SSQ+ S GE +
Sbjct: 154 LGSDFPTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESSQKRSAGETDSTAAKP 213
Query: 182 DDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 241
DDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL
Sbjct: 214 ADDDMVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESIL 273
Query: 242 YKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
YKLL A++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 274 YKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNIS 310
>AT1G33360.1 | Symbols: | ATP-dependent Clp protease |
chr1:12092111-12095789 FORWARD LENGTH=656
Length = 656
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 140/156 (89%), Gaps = 5/156 (3%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKD 182
LGRD PTPKEICK LDKFVIGQ+ AKKVLSVAVYNHYKRIY+ S ++GS ++ D
Sbjct: 245 LGRDFPTPKEICKWLDKFVIGQSRAKKVLSVAVYNHYKRIYHTSMKKGSA-----AQPID 299
Query: 183 DDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILY 242
DDD+VEL+KSNVLLMGPTGSGKTLLAKTLAR VNVPFVIADATTLTQAGYVG+DVESIL+
Sbjct: 300 DDDNVELDKSNVLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILH 359
Query: 243 KLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
KLL AEFNVQAAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 360 KLLTVAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 395
>AT5G49840.1 | Symbols: | ATP-dependent Clp protease |
chr5:20255243-20259035 FORWARD LENGTH=608
Length = 608
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/151 (75%), Positives = 130/151 (86%), Gaps = 1/151 (0%)
Query: 127 LPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKDDD-D 185
LPTPKEIC+GLD+FVIGQ AKKVLSVAVYNHYKRIY+AS ++GS +S + +DD+ D
Sbjct: 197 LPTPKEICQGLDEFVIGQEKAKKVLSVAVYNHYKRIYHASRKKGSASESYNIDMEDDNID 256
Query: 186 HVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL 245
HVEL+KSNVLL+GPTGSGKTLLAKTLAR VNVPF IADAT+LTQA YVGEDVESILYKL
Sbjct: 257 HVELDKSNVLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQASYVGEDVESILYKLY 316
Query: 246 VAAEFNVQAAQQGIVYIDEVDKITKKAESLN 276
V A NV+ AQ+GIVYIDEVDK+T K+ S N
Sbjct: 317 VEAGCNVEEAQRGIVYIDEVDKMTMKSHSSN 347