Miyakogusa Predicted Gene

Lj5g3v1201250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1201250.1 Non Chatacterized Hit- tr|I1KK11|I1KK11_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.24,0,coiled-coil,NULL; seg,NULL; Slu7,Pre-mRNA splicing
Prp18-interacting factor; STEP II SPLICING FACTOR,CUFF.54963.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interactin...   766   0.0  
AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interactin...   714   0.0  
AT3G45950.1 | Symbols:  | Pre-mRNA splicing Prp18-interacting fa...   456   e-128

>AT1G65660.1 | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting
           factor | chr1:24418295-24421231 REVERSE LENGTH=535
          Length = 535

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/539 (68%), Positives = 417/539 (77%), Gaps = 4/539 (0%)

Query: 1   MATASATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP 60
           MATAS  FKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN+EKP
Sbjct: 1   MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKW 120
           SLKHQRKWKSDPNYTKSWYDRGAK FQA+ YRKGAC+NCGAMTH  K+C++RPRK+GAK+
Sbjct: 61  SLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKY 120

Query: 121 TNMHIAPDEKIETFELDYDGKRDRWNGYDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TNM+IAPDEKIE+FELDYDGKRDRWNGYDP+T                            
Sbjct: 121 TNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKYLKEQQLKKLE 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXAHALKVDEAKVDESKQADFAKVEKRVRXXXXXXXXXVR 240
                                    L+VDEAKVDES+Q DFAKVEKRVR         VR
Sbjct: 181 EKNNNEKGDDANSDGEEDEDD----LRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVR 236

Query: 241 NLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFK 300
           NLRIREDTAKYLLNLDVNS +YDPKT SMREDPLPDADPN+KFY GDNQYR SGQALEFK
Sbjct: 237 NLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFK 296

Query: 301 QLNIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEEL 360
           QLNIH+WEAF+KGQD+H+QAAPSQAELLYK+F++ KEKLKSQTKD I+ KYGNAA ++E+
Sbjct: 297 QLNIHSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQTKDTIMDKYGNAATEDEI 356

Query: 361 PKELLLGQTERQVEYDRAGRIIKGLEASLPKSKYEEDVYINNHTSIWGSWWNDHQWGYKC 420
           P ELLLGQ+ERQVEYDRAGRIIKG E  LPKSKYEEDV+ NNHTS+WGS+W DHQWGYKC
Sbjct: 357 PMELLLGQSERQVEYDRAGRIIKGQEVILPKSKYEEDVHANNHTSVWGSYWKDHQWGYKC 416

Query: 421 CKQTIRNSYCTXXXXXXXXXXXXDLMKANIDRKVASEDTPAPAEEKRLATWGTDVPDDLV 480
           C+Q IRNSYCT            DLMKANI RK A+E++P   EEKR+A+WGTD+P+DL 
Sbjct: 417 CQQIIRNSYCTGSAGIEAAEAALDLMKANIARKEATEESPKKVEEKRMASWGTDIPEDLE 476

Query: 481 LDQKKLDEALXXXXXXXXXXXXXXXXXYNVRWNDEVTPEEMEAYRVKKIHHDDPMKDFL 539
           L+++ L  AL                 YNV++N++VTPEEMEAYR+K++HH+DPMKDFL
Sbjct: 477 LNEEALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDFL 535


>AT4G37120.1 | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting
           factor | chr4:17486679-17489123 FORWARD LENGTH=536
          Length = 536

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/538 (63%), Positives = 402/538 (74%), Gaps = 4/538 (0%)

Query: 1   MATASATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP 60
           MATAS  FKSREDHRK++ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +E+P
Sbjct: 1   MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKW 120
           SLKHQ+ WK +P   K WYDRG K +QA+ YRKGAC NCGAMTH++K+C++RPRK+GAK+
Sbjct: 61  SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKY 120

Query: 121 TNMHIAPDEKIETFELDYDGKRDRWNGYDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           TNM+IA DEKIE+FELDYDGKRDRWNGYD +T                            
Sbjct: 121 TNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLE 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXAHALKVDEAKVDESKQADFAKVEKRVRXXXXXXXXXVR 240
                                    L+VDEAKVDES+Q DFAKVEKRVR         VR
Sbjct: 181 EKNNNENGDDATSDGEEDLDD----LRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVR 236

Query: 241 NLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFK 300
           NLRIREDTAKYLLNLDVNS +YDPKT SMREDPLPDADPNEKFY GDNQYR SGQALEFK
Sbjct: 237 NLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFK 296

Query: 301 QLNIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEEL 360
           Q+NIH+ EAF+KG D+H+QAAPSQAELLYKNFK+ KEKLK+QTKD I++KYGNAA + E+
Sbjct: 297 QINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEI 356

Query: 361 PKELLLGQTERQVEYDRAGRIIKGLEASLPKSKYEEDVYINNHTSIWGSWWNDHQWGYKC 420
           P ELLLGQ+ERQ+EYDRAGRI+KG E  +PKSKYEEDV+ NNHTS+WGSWW DHQWGYKC
Sbjct: 357 PMELLLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKC 416

Query: 421 CKQTIRNSYCTXXXXXXXXXXXXDLMKANIDRKVASEDTPAPAEEKRLATWGTDVPDDLV 480
           C+QTIRNSYCT            DLMKANI RK AS+++P   EEK++ATWGTD+P+DL 
Sbjct: 417 CQQTIRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLE 476

Query: 481 LDQKKLDEALXXXXXXXXXXXXXXXXXYNVRWNDEVTPEEMEAYRVKKIHHDDPMKDF 538
           L+++ L  AL                 YNV + ++VT EEMEAYR+K++HH+DPM++F
Sbjct: 477 LNEEALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNF 534


>AT3G45950.1 | Symbols:  | Pre-mRNA splicing Prp18-interacting
           factor | chr3:16889461-16890618 REVERSE LENGTH=385
          Length = 385

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/370 (61%), Positives = 267/370 (72%), Gaps = 14/370 (3%)

Query: 1   MATASATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP 60
           MATAS  FKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  +EKP
Sbjct: 1   MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61  SLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKW 120
           SLKHQ+ WK+ P  T S+YDRGAKT+QA+ YRKGAC+NCGAMTH+ K+C+ERPRK+GAK+
Sbjct: 61  SLKHQKNWKTKPVSTTSYYDRGAKTYQAEKYRKGACQNCGAMTHDVKTCMERPRKVGAKY 120

Query: 121 TNMHIAPDEKIETFELDYDGKRDRWNGYDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           T+ +IAPDEKIE+ E DYDGKRDRWNGYDP++                            
Sbjct: 121 TDKNIAPDEKIESLEFDYDGKRDRWNGYDPSSYCHVRDRHEAKENAREKYLNEQQLIAKL 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXAHALKVDEAKVDESKQADFAKVEKRVRXXXXXXXXXVR 240
                                    L+VDEAK+DES Q DFAKV+KRVR         VR
Sbjct: 181 EEKNIDGEEED--------------LRVDEAKIDESMQVDFAKVKKRVRTTDGGSKGTVR 226

Query: 241 NLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFK 300
           NLRIRED AKYLLNLDVNS YYDPK+ SMREDPLP  DPNEKF   DNQYR SGQA+EFK
Sbjct: 227 NLRIREDPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEKFCLRDNQYRNSGQAIEFK 286

Query: 301 QLNIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEEL 360
           Q N+++ EAF+KGQD+H+QAAPSQAEL YK  KI KEKL SQ KDAII KYG+AAA++++
Sbjct: 287 QQNMYSCEAFDKGQDIHMQAAPSQAELCYKRVKIAKEKLNSQRKDAIIAKYGDAAAKDDI 346

Query: 361 PKELLLGQTE 370
           P ELLLGQ++
Sbjct: 347 PMELLLGQSK 356