Miyakogusa Predicted Gene

Lj5g3v1190150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1190150.1 Non Chatacterized Hit- tr|E1ZJK0|E1ZJK0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.09,0.000000000000009,Golgin_A5,Golgin subfamily A member
5; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; GOLGIN-84,NULL;
s,CUFF.54960.1
         (230 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19950.1 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8...   278   2e-75
AT2G19950.2 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8...   278   2e-75

>AT2G19950.1 | Symbols: GC1 | golgin candidate 1 |
           chr2:8616341-8621219 REVERSE LENGTH=707
          Length = 707

 Score =  278 bits (711), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 150/186 (80%)

Query: 1   MEARLRREQKKSPEEANQVIQMQAWQEEVERARQGQRXXXXXXXXXXXXXQKMRVEMAAM 60
           ME R RR QKK+P+EANQVIQ+QAWQ+EV+RARQGQR             QK+RVEMAAM
Sbjct: 483 MEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAM 542

Query: 61  KRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQEAQAD 120
           KRDAEHYSRQEH ELEKRYRELTDLLYYKQTQLETM SEKAA EFQLEKE+KRL EAQ +
Sbjct: 543 KRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVE 602

Query: 121 VEXXXXXXXXXXXWEDETEIKSLEPLPLHHRHLAGASIQLQKAVKLLDSGAVRATRFLWR 180
           VE           WE+++EIK+LEPLPL+HRH+A AS QLQ AVKLLDSGAVRATRFLWR
Sbjct: 603 VEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWR 662

Query: 181 YPTARV 186
           YP AR+
Sbjct: 663 YPIARM 668


>AT2G19950.2 | Symbols: GC1 | golgin candidate 1 |
           chr2:8616341-8621219 REVERSE LENGTH=710
          Length = 710

 Score =  278 bits (711), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 150/186 (80%)

Query: 1   MEARLRREQKKSPEEANQVIQMQAWQEEVERARQGQRXXXXXXXXXXXXXQKMRVEMAAM 60
           ME R RR QKK+P+EANQVIQ+QAWQ+EV+RARQGQR             QK+RVEMAAM
Sbjct: 486 MEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAM 545

Query: 61  KRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQEAQAD 120
           KRDAEHYSRQEH ELEKRYRELTDLLYYKQTQLETM SEKAA EFQLEKE+KRL EAQ +
Sbjct: 546 KRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVE 605

Query: 121 VEXXXXXXXXXXXWEDETEIKSLEPLPLHHRHLAGASIQLQKAVKLLDSGAVRATRFLWR 180
           VE           WE+++EIK+LEPLPL+HRH+A AS QLQ AVKLLDSGAVRATRFLWR
Sbjct: 606 VEKSRVSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWR 665

Query: 181 YPTARV 186
           YP AR+
Sbjct: 666 YPIARM 671