Miyakogusa Predicted Gene

Lj5g3v1176940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176940.1 Non Chatacterized Hit- tr|I3S398|I3S398_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.19,0,Ribosomal_L14e,Ribosomal protein L14; SUBFAMILY NOT
NAMED,NULL; 60S RIBOSOMAL PROTEIN L14,NULL; no
d,NODE_22634_length_378_cov_1010.415344.path2.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20450.1 | Symbols:  | Ribosomal protein L14 | chr2:8813923-8...   216   2e-57
AT4G27090.1 | Symbols:  | Ribosomal protein L14 | chr4:13594104-...   213   3e-56

>AT2G20450.1 | Symbols:  | Ribosomal protein L14 |
           chr2:8813923-8815071 FORWARD LENGTH=134
          Length = 134

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 116/125 (92%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           M FKRFVE+GRVALVNYG+DYG+LVVIVD++DQNRAL+DAPDMER QMNLKRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIKRAG 
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRTEL 125
           VR EL
Sbjct: 121 VRQEL 125


>AT4G27090.1 | Symbols:  | Ribosomal protein L14 |
           chr4:13594104-13595187 REVERSE LENGTH=134
          Length = 134

 Score =  213 bits (541), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 115/125 (92%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           M FKR+VE+GRVALVNYG+D+G+LVVIVD++DQNRAL+DAPDMER QMN KRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIK+AG 
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRTEL 125
           VR EL
Sbjct: 121 VRQEL 125