Miyakogusa Predicted Gene

Lj5g3v1176860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176860.1 Non Chatacterized Hit- tr|I1PTI1|I1PTI1_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,81.13,7e-19,PAP_fibrillin,Plastid lipid-associated
protein/fibrillin conserved domain; coiled-coil,NULL;
seg,NUL,CUFF.54938.1
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23400.1 | Symbols: FIB4 | Plastid-lipid associated protein P...   282   2e-76
AT2G46910.1 | Symbols:  | Plastid-lipid associated protein PAP /...    52   6e-07
AT5G09820.2 | Symbols:  | Plastid-lipid associated protein PAP /...    48   1e-05

>AT3G23400.1 | Symbols: FIB4 | Plastid-lipid associated protein PAP
           / fibrillin family protein | chr3:8376636-8378225
           REVERSE LENGTH=284
          Length = 284

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 99  GLNRGLAANEDDLQKXXXXXXXXXXXGGVVDLSVENIDKLQGRWKLIYSSAFSSRTLGGS 158
           GLNRGL A+ DDL++           GG VDL+ +++DKLQG+W+L+YSSAFSSR+LGGS
Sbjct: 97  GLNRGLVASVDDLERAEVAAKELETAGGPVDLT-DDLDKLQGKWRLLYSSAFSSRSLGGS 155

Query: 159 RPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGS 218
           RPG PTGRL+P+TLGQVFQRIDV SKDFDNI E++LGAPWP PPLEATATLAHKFEL+G+
Sbjct: 156 RPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELLGT 215

Query: 219 SKIKIKFEKTTVKTLGNFSQLPPLELPRIPDALRPSSNRGSGEFEVTFLDSDTRITRGDK 278
            KIKI FEKTTVKT GN SQ+PP ++PR+PD+ RPSSN G+G+FEVT++D   RITRGD+
Sbjct: 216 CKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDR 275

Query: 279 GELRVFVIA 287
           GELRVFVIA
Sbjct: 276 GELRVFVIA 284


>AT2G46910.1 | Symbols:  | Plastid-lipid associated protein PAP /
           fibrillin family protein | chr2:19272427-19273856
           FORWARD LENGTH=284
          Length = 284

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 83/211 (39%), Gaps = 29/211 (13%)

Query: 44  HLQTSQSRRSLLVVKSAVGEGREASVVDPPPSTPDFPWDAPSKSTLKFNLLSAVSGLNRG 103
           +++T+  +R    V  A GE     VVD          D   K   K +LL AV    RG
Sbjct: 28  NIKTNHRKRFSCRVAVASGETSARVVVDNE-------LDLEHK---KHDLLRAVQDTQRG 77

Query: 104 LAANEDDLQKXXXXXXXXXXXGGVVDLSVENID--KLQGRWKLIYSSAFSSRTLGGSRPG 161
           L A  D                G      E ID  KL G W+L Y+SA     L      
Sbjct: 78  LTATSDQRSIIEEALVTVEGFNGG-----EEIDPVKLDGTWRLQYTSAPDVVVLF----- 127

Query: 162 PPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPL-----EATATLAHKFELI 216
               RL    +GQVFQ+ +   +    I+   +   W LP L      AT  +  KF+ +
Sbjct: 128 EAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV--QWSLPSLLEEQEGATLVVTAKFDKV 185

Query: 217 GSSKIKIKFEKTTVKTLGNFSQLPPLELPRI 247
            S  I ++FE+ +V+ +    QL  L  P I
Sbjct: 186 SSRNIYLQFEEISVRNININEQLQALIAPAI 216


>AT5G09820.2 | Symbols:  | Plastid-lipid associated protein PAP /
           fibrillin family protein | chr5:3056090-3057380 REVERSE
           LENGTH=273
          Length = 273

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 32/208 (15%)

Query: 87  STLKFNLLSAVSGLNRGLAANEDDLQKXXXXXXXXXXXGGVVDLSVEN--------IDKL 138
           S +K  L  A+ G+NRG+   + D +            G V  L   N        +DK+
Sbjct: 84  SHIKEELYEALKGINRGIFGVKSDKK--------TEIEGLVKLLECRNPTPEPTGELDKI 135

Query: 139 QGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPW 198
            G WKLIYS+      LG  R     G    ++LG + Q+ID+      ++++  +    
Sbjct: 136 GGCWKLIYSTI---TVLGSKRT--KLGLRDFVSLGDLLQQIDIAQGKTVHVLKFDVRG-- 188

Query: 199 PLPPLEATATLAHKFELIGSSKIKIKFEKTTVKTLGNFSQLPPLELPRIPDALRPSSNRG 258
            L  L+    +   F++   S ++I +E +T+K      QL  + + R    L       
Sbjct: 189 -LNLLDGEFRIVASFKISSKSSVEITYESSTIKP----DQL--MNIFRKNMDLLLGIFNP 241

Query: 259 SGEFEVTFLDSDTRITRGDKGELRVFVI 286
            G FE+++LD D ++ R  KG   VFV+
Sbjct: 242 EGLFEISYLDEDLQVGRDGKGN--VFVL 267