Miyakogusa Predicted Gene

Lj5g3v1176670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176670.1 Non Chatacterized Hit- tr|C6T5N3|C6T5N3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9678 PE=,72.31,2e-19,no
description,Nucleic acid-binding,
OB-fold,gene.Ljchr5_pseudomol_20120830.path1.gene3871.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-termi...    80   3e-16
AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-termi...    55   9e-09

>AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr4:8406500-8407036 REVERSE LENGTH=178
          Length = 178

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M DY+Y PGEN  FMNEK+S+I  + TVR +VIG +WME +R F+  AL SLEG+YLGP+
Sbjct: 118 MPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQ--ALASLEGDYLGPL 175

Query: 61  AS 62
           + 
Sbjct: 176 SE 177


>AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr3:8115645-8116169 FORWARD LENGTH=174
          Length = 174

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGP 59
           M  Y + PGEN +FMN+  S+I     VRF+V+ T W E ++ F   AL S++G+ LGP
Sbjct: 117 MPGYEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDF--MALASIDGDNLGP 173