Miyakogusa Predicted Gene
- Lj5g3v1174300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1174300.1 tr|A9RXM1|A9RXM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71882
,27.27,0.00000000000004,no description,DNA double-strand break repair
and VJ recombination XRCC4, N-terminal; no description,CUFF.54888.1
(260 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23100.2 | Symbols: XRCC4 | homolog of human DNA ligase iv-bi... 270 7e-73
AT3G23100.1 | Symbols: XRCC4 | homolog of human DNA ligase iv-bi... 270 7e-73
AT1G61410.1 | Symbols: | DNA double-strand break repair and VJ ... 89 4e-18
>AT3G23100.2 | Symbols: XRCC4 | homolog of human DNA ligase
iv-binding protein XRCC4 | chr3:8220721-8221991 FORWARD
LENGTH=264
Length = 264
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 131/214 (61%), Positives = 164/214 (76%), Gaps = 6/214 (2%)
Query: 3 ETKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWDQP 62
E +HTCL+L+I A+ IFVKGTW ++ FD+++TDG ++W C+A+E+EV +RAAQWDQP
Sbjct: 21 EKTKHTCLRLEISGAD-PIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWDQP 79
Query: 63 VSEYVEMSERYLGFQQPGSVYAFADPGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKKTT 122
VSEY++++E+YLGFQQP SVY+F+D +G KRLSWTFEKEG L+WRWKC S D KK T
Sbjct: 80 VSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKIT 139
Query: 123 AEILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFLGV 182
ILDFLM+ANI LSEEVV K FEKM+ E+E+CLAQ EK+ EK EFES Y KFL V
Sbjct: 140 VGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSV 199
Query: 183 LNSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDK 216
LN+KK+KLR LRD K+D +EEE TDK
Sbjct: 200 LNAKKAKLRALRD---KEDSVR--VVEEEESTDK 228
>AT3G23100.1 | Symbols: XRCC4 | homolog of human DNA ligase
iv-binding protein XRCC4 | chr3:8220721-8221991 FORWARD
LENGTH=264
Length = 264
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 131/214 (61%), Positives = 164/214 (76%), Gaps = 6/214 (2%)
Query: 3 ETKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWDQP 62
E +HTCL+L+I A+ IFVKGTW ++ FD+++TDG ++W C+A+E+EV +RAAQWDQP
Sbjct: 21 EKTKHTCLRLEISGAD-PIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWDQP 79
Query: 63 VSEYVEMSERYLGFQQPGSVYAFADPGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKKTT 122
VSEY++++E+YLGFQQP SVY+F+D +G KRLSWTFEKEG L+WRWKC S D KK T
Sbjct: 80 VSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKIT 139
Query: 123 AEILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFLGV 182
ILDFLM+ANI LSEEVV K FEKM+ E+E+CLAQ EK+ EK EFES Y KFL V
Sbjct: 140 VGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSV 199
Query: 183 LNSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDK 216
LN+KK+KLR LRD K+D +EEE TDK
Sbjct: 200 LNAKKAKLRALRD---KEDSVR--VVEEEESTDK 228
>AT1G61410.1 | Symbols: | DNA double-strand break repair and VJ
recombination XRCC4 | chr1:22658708-22659064 REVERSE
LENGTH=118
Length = 118
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 130 MDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFLGVLNSKKSK 189
M+ANI LSEEVV K FEKMK E+E+CLAQ EK+ EK EFE+ Y KFL VLN+KK+K
Sbjct: 1 MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60
Query: 190 LRELRDQ 196
LR +RD+
Sbjct: 61 LRAVRDK 67