Miyakogusa Predicted Gene
- Lj5g3v1172180.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1172180.2 Non Chatacterized Hit- tr|I1NI47|I1NI47_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,76.54,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
CRM,RNA-binding, CRM domain; no description,RNA-bin,CUFF.54882.2
(681 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 612 e-175
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 581 e-166
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 352 6e-97
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 338 6e-93
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 296 3e-80
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 229 5e-60
AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 61 3e-09
AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (C... 56 8e-08
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C... 54 4e-07
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 50 5e-06
AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 50 5e-06
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 612 bits (1579), Expect = e-175, Method: Compositional matrix adjust.
Identities = 355/721 (49%), Positives = 455/721 (63%), Gaps = 91/721 (12%)
Query: 1 MAVVPTRQLHPAAT---FFDSFHTSHRFHSLRF-------------------------FS 32
MA+ P+ P F SF +S F LR+ FS
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFCFRFLRYSSSISLGSCKGVTFSSRNDQIASRRFS 60
Query: 33 ES-------WLRRWNEPTCKHNRPKPPRAVLDYQGSGNGHESKYXXXXXXXXXXXXXXXX 85
S WL WN K N+PKPP+ V++Y+ G S+
Sbjct: 61 FSRDCNNGVWLENWNR-IQKRNQPKPPKVVVNYRKEGRFSGSEIVSGDDNRSRDGDGS-- 117
Query: 86 XXXXXXTMDRIVEKLKKFGYVDGIEEQSRTKERVIEKGSVEDIFYVEEGLLPNTRGGFSP 145
TM++IVEKLKK+GY++ ++ + +ER IEKGSVEDIFYVEEG LPNTRGGF+
Sbjct: 118 ------TMEKIVEKLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTE 171
Query: 146 ESPFGIGSVGSDNRVVRFPWEKPMDNEVEETRPQ---RRKSKTYXXXXXXXXXXXXXXXX 202
ES G +V N V FPWEK E +E + +++++
Sbjct: 172 ESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRN 231
Query: 203 XXFQKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGL 262
F+ K R+ GVTQ VD I EKW+++EIVRLK EG +ALNM++MHEILE+KTGGL
Sbjct: 232 LTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGL 291
Query: 263 VIWRSGNSVSLYRGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSENSSKLLSP 322
VIWRSG S+SLYRGV+YE PS + NK+ R+ E P + +I E ++ +
Sbjct: 292 VIWRSGTSISLYRGVSYELPSGKWNKQ--RREET-------PPEAVIENHDETTT--MVD 340
Query: 323 PSDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEANTPMEKLESTNDQKEKDYVPKVN 382
SD++++ P + E+T+ +K+ P V
Sbjct: 341 KSDEKVH-------------------------------LPQLEQETTSVEKKDQTSPVVE 369
Query: 383 YEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRASLGLKEAT 442
YEDE+D+LLD LGPR+ DWPG PLPVDAD+LP +P Y+PPFRVLP+GVR+SLG KEAT
Sbjct: 370 YEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEAT 429
Query: 443 ALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSERMAEEIKK 502
AL+R+AR +PPHFALGRSRQLQGLA AM++LWE+S +AKIA+KRGVQ TTSERMAE++KK
Sbjct: 430 ALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKK 489
Query: 503 LTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRASS-LLIPA 561
LTGG +LSRNKDFLVF+RGKNFLS +V AL+E+ER + ++DEEEQARLR SS L++P+
Sbjct: 490 LTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPS 549
Query: 562 INTSQLSAGAGTLGETLDADAKWGKTL-DERHKQKVMIEVEQLRHANIVRKLEQKLSLAE 620
+ AGTLGETLDA KWGK L D+ H +V EVE LRH N+VRKLE+KL+ AE
Sbjct: 550 TEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAE 609
Query: 621 RKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTI 680
RK+++AE+ L KVE LKP++ + DPESITDEERFMFRKLGL+MKAFLLLGRRGVFDGT+
Sbjct: 610 RKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTV 669
Query: 681 E 681
E
Sbjct: 670 E 670
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 581 bits (1498), Expect = e-166, Method: Compositional matrix adjust.
Identities = 326/627 (51%), Positives = 418/627 (66%), Gaps = 90/627 (14%)
Query: 92 TMDRIVEKLKKFGYVDGIEEQSRT--KERVIEKGSVEDIFYVEEGLLPNTRGGFSPESPF 149
TM++IVEKLKK+G+VD + Q + +ER IEK SVE+ FYVEE RGGFS ESPF
Sbjct: 124 TMEKIVEKLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEE-----RRGGFSEESPF 178
Query: 150 GIGSVGSDNRVVRFPWEKPMDNEVEETR----PQRRKSKTYXXXXXXXXXXXXXXXXXXF 205
G+ G+D V+FPWEK E +E +++S+ F
Sbjct: 179 GVYG-GNDE--VKFPWEKVSSMEKKELVNGEWTAKKESRYSLAEMTLSEFELNRLRNVMF 235
Query: 206 QKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIW 265
+ K K RV +GVTQAVVD I EKW+ SEIVRLK EG +ALNM+RMHEILERKTGGLVIW
Sbjct: 236 RTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295
Query: 266 RSGNSVSLY--RGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSENSSKLLSPP 323
RSG S++LY +G + D S NK++YR++E L P+ + + S +L++ P
Sbjct: 296 RSGTSIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSL--PTSTV-----DQSVQLVNLP 348
Query: 324 SDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEANTPMEKLESTNDQKEKDYVPKVNY 383
+EK + K++ +V Y
Sbjct: 349 Q--------------------------------------LEKEPTVVGNKDRTSPQEVEY 370
Query: 384 EDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRASLGLKEATA 443
EDE+++LL+GLGPRYTDW G PLPVDAD+LP VPGY+PPFR LP+GVR++LG KEAT+
Sbjct: 371 EDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATS 430
Query: 444 LKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSERMAEEIKKL 503
L+RIA LPPHFALGRSRQLQGLA AM+KLW++S IAK+ALKRGVQLTTSERMAE+IK+L
Sbjct: 431 LRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRL 490
Query: 504 TGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRASS-LLIPAI 562
TGG LLSRNKDFLVF+RGK+FLS +V +AL+E+E + + ++DEEEQARLRASS L++P+I
Sbjct: 491 TGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSI 550
Query: 563 NTSQLSA---------------------------GAGTLGETLDADAKWGKTLD-ERHKQ 594
+Q A AGTLGETLDA KWGK LD + H +
Sbjct: 551 KANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVE 610
Query: 595 KVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEER 654
++ EVE++R A +VRKLE+KL+ AE+K+++AE+AL KVEESLKP++ + D E IT+EER
Sbjct: 611 EMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEER 670
Query: 655 FMFRKLGLRMKAFLLLGRRGVFDGTIE 681
FMF+KLGL+MKAFLLLGRRGVFDGT+E
Sbjct: 671 FMFQKLGLKMKAFLLLGRRGVFDGTVE 697
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 352 bits (902), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 194/469 (41%), Positives = 285/469 (60%), Gaps = 47/469 (10%)
Query: 213 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 272
+ +G+TQAV+++I++ WR E+VRLKF A +MK HEI+ER+TGG+VIWR+G+ +
Sbjct: 264 IPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMV 323
Query: 273 LYRGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSENSSKLLSPPSDKQIYRXX 332
+YRG+ Y+ P + N+ K +S D+ K S+ L+ D I
Sbjct: 324 VYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQSAPLVI--KDPII---- 377
Query: 333 XXXXXXXXXXXXXXALKLSDVASYSEANTPMEKLESTNDQKEKDYVPKVNYEDEVDKLLD 392
P+ K T + E E + LLD
Sbjct: 378 ---------------------------KNPIRKENMTEE------------EVEFNSLLD 398
Query: 393 GLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRASLGLKEATALKRIARGLP 452
LGPR+ +W G LPVDAD+LP T+PGY+ PFR+LP G+R++L E T L++I + LP
Sbjct: 399 SLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLP 458
Query: 453 PHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSERMAEEIKKLTGGTLLSRN 512
HFALGR+R QGLA A++++WE+S IAKIA+KRG+Q T ++ MA+E+K LTGG LL RN
Sbjct: 459 CHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRN 518
Query: 513 KDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRASSLLIPAINTSQLSAGAG 572
K ++V +RGK+FL + V L ER+ + K ++D EE+ R R + P ++ A AG
Sbjct: 519 KYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPV--GDKVPAEAG 576
Query: 573 TLGETLDADAKWGKTLDERHKQKVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMK 632
TL E +A A+WGK + H++K++ E ++ +A +V++++ KL+LA+ K RAEK L K
Sbjct: 577 TLAEFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSK 636
Query: 633 VEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 681
+E S+ P+ D E I++EER MFRK+GL+MKA+L +G RGVFDG IE
Sbjct: 637 IEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIE 685
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 338 bits (867), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 225/614 (36%), Positives = 327/614 (53%), Gaps = 87/614 (14%)
Query: 93 MDRIVEKLKKFGYVDGIEEQSRTKERVIE-----KGSVEDIFYVEEGLLPNTRGGFSPES 147
+ RI EKL+ G+V EE+ + R I K S +IF LP R G + ++
Sbjct: 60 IQRIAEKLRSLGFV---EEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116
Query: 148 PFGIGSV-----GSDNRVVRFP-----WEKPMDNEVEETRPQRRKSKTYXXXXXXXX--X 195
+ S GS + R+ W+K ET +R+K +
Sbjct: 117 SWSTPSYPVPKPGSGTAISRYHELKRVWKK-------ETEMERKKEEKVPSLAELTLPPA 169
Query: 196 XXXXXXXXXFQKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEIL 255
+ K ++G +G+T+ +V+ IHE+WRT+E+V++ E + +NMKR H++L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query: 256 ERKTGGLVIWRSGNSVSLYRGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSEN 315
E KTGGLVIWRSG+ + LYRGV Y+ P ++ + ++ + + + D+ + E
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSM----DQGVVDSREK 285
Query: 316 SSKLLSPPSDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEANT---PMEKLESTNDQ 372
S +++ ++ S N PM +
Sbjct: 286 QS--------------------------------IAESSAPSITNKMVKPMLTQGVGSPD 313
Query: 373 KEKDYVP-KVNYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFG 431
K + +P +V +E D+LL+GLGPR+TDW +PLPVD D+LPA VP Y+ PFR+LP+G
Sbjct: 314 KVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYG 373
Query: 432 VRASLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLT 491
V L E T ++R+ R LP HFALGR+R LQGLAVA++KLWE+ +AKIA+KRGVQ T
Sbjct: 374 VSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNT 433
Query: 492 TSERMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQAR 551
SE MAEE+K LTGGTL+SR+KDF+V +RGK+FL + V+ A+ ER R ME+
Sbjct: 434 NSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEN------ 487
Query: 552 LRASSLLIPAINTSQLSAGAGTLGETLDADAKWGKTLDERHKQKVMIEVEQLRHAN---- 607
SS+ + ++ + E ++ +AK K + H+ K R N
Sbjct: 488 ---SSVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKS-------RQRNSPEA 537
Query: 608 IVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMKAF 667
I+ K KLS+A K AEK L +E P D E IT++E++M RK+GL+MK F
Sbjct: 538 ILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPF 597
Query: 668 LLLGRRGVFDGTIE 681
LLLGRRGVFDGTIE
Sbjct: 598 LLLGRRGVFDGTIE 611
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 224/334 (67%), Gaps = 10/334 (2%)
Query: 358 EANTPMEKLESTND--QKEKDY---VPKVNYED--EVDKLLDGLGPRYTDWPGCEPLPVD 410
EAN + + D Q++ +Y VPK + E++ LLD +GPR+ DW GC P PVD
Sbjct: 346 EANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVD 405
Query: 411 ADMLPATVPGYQPPFRVLPFGVRASLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAM 470
AD+LP V GY+ PFR+LP GV+ L E T ++R+AR PPHFALGRSR+LQGLA AM
Sbjct: 406 ADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAM 465
Query: 471 IKLWEESSIAKIALKRGVQLTTSERMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVT 530
+KLW +S+IAKIA+KRGV+ T +ERMAEE+K+LT G L+SRNK+++VF+RG +F+ V
Sbjct: 466 VKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVA 525
Query: 531 QALLERER-IAKAMEDEEEQARLRASS--LLIPAINTSQLSAGAGTLGETLDADAKWGKT 587
+AL ER++ I + ++ +E+QAR AS+ L + + AGTL ET+ A ++W
Sbjct: 526 EALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPN 585
Query: 588 LDERHKQKVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPE 647
+++ E ++ A ++R LE +L ++K+ RAE+ L KV++ L PS+ D E
Sbjct: 586 ASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSE 645
Query: 648 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIE 681
IT+EER ++RK+GL M FLLLGRR V+DGTIE
Sbjct: 646 IITEEERLLYRKIGLSMDPFLLLGRREVYDGTIE 679
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 61/74 (82%)
Query: 212 RVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSV 271
+VGS+G+TQA+V+ IHEKW E+V+LKF +LNMKR HE+LE+KTGGLVIWRSG+SV
Sbjct: 264 KVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSV 323
Query: 272 SLYRGVTYEDPSLQ 285
LYRG++Y+ +Q
Sbjct: 324 VLYRGISYKLKCVQ 337
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 186/309 (60%), Gaps = 6/309 (1%)
Query: 375 KDYVPKVNYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRA 434
+D + YE E D+LLDGLGPRY DW P PVDAD+LP V GY P R P RA
Sbjct: 300 QDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRA 359
Query: 435 SLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSE 494
L +E T L+ IA+ LP HF LGR+ LQGLA A++KLWE+ IAKIA+K G T +E
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 495 RMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRA 554
MA+E++ LTGG L+ RNK +V +RGK+FLS +V + +RER+ + EE R
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESD 479
Query: 555 SSLLIPAINTSQL--SAGAGTLGETLDADAKWGKTLDERHKQKVMIEVEQLRHANIVRKL 612
LL N QL + +GTL E + K+G+ +D R+ + E E+ R ++
Sbjct: 480 IELLEVVTNGKQLKETNKSGTLLEFQELQRKFGE-MDPRNLE---TEAEKARLEKELKSQ 535
Query: 613 EQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLLGR 672
E KLS+ + KI ++ L K+ KPS+ D E +T+EER R++GL+M + L+LGR
Sbjct: 536 EHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 595
Query: 673 RGVFDGTIE 681
RGVF G +E
Sbjct: 596 RGVFFGVME 604
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 213 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 272
V +GVT+ VV++I W+ +E+ ++F+ NM+R EI+E KTGGLV+ +
Sbjct: 228 VRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLV 287
Query: 273 LYRG 276
+YRG
Sbjct: 288 VYRG 291
>AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr5:22293346-22294909
FORWARD LENGTH=358
Length = 358
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 213 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 272
+G GVT ++D IH W+ +E VR+K G L+M + LE K+GG +++R+ N +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILV 225
Query: 273 LYRGVTYE 280
LYRG Y+
Sbjct: 226 LYRGRNYD 233
>AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr2:8644464-8647090 FORWARD
LENGTH=701
Length = 701
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 213 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 272
+G G+T +++ IH+ W+ + ++K +G ++M + E LE K GG VI+R G +
Sbjct: 264 MGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLF 323
Query: 273 LYRGVTY 279
L+RG Y
Sbjct: 324 LFRGRNY 330
>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr1:8312199-8314740 REVERSE
LENGTH=564
Length = 564
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 213 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 272
+G G T +++ IH W+ + +++ +G ++M + +LE KTGG +I R G V
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVY 283
Query: 273 LYRGVTY 279
L+RG Y
Sbjct: 284 LFRGRNY 290
>AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223998-9225505 FORWARD LENGTH=444
Length = 444
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 613 EQKLSLAERKIMRAEKALMKVEESLKPSD---YKADPESITDEERFMFRKLGLRMKAFLL 669
E+K+ RK + E+ LM+ + L+PS+ DPE +T EE F + K+GL+ K ++
Sbjct: 138 EEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 670 LGRRGVFDGTI 680
+GRRG++ G I
Sbjct: 198 VGRRGIYQGVI 208
>AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9224294-9225505 FORWARD LENGTH=380
Length = 380
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 613 EQKLSLAERKIMRAEKALMKVEESLKPSD---YKADPESITDEERFMFRKLGLRMKAFLL 669
E+K+ RK + E+ LM+ + L+PS+ DPE +T EE F + K+GL+ K ++
Sbjct: 74 EEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 133
Query: 670 LGRRGVFDGTI 680
+GRRG++ G I
Sbjct: 134 VGRRGIYQGVI 144