Miyakogusa Predicted Gene
- Lj5g3v1172180.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1172180.1 tr|G7I3X9|G7I3X9_MEDTR Chloroplastic group IIA
intron splicing facilitator CRS1 OS=Medicago
truncatu,71.48,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
YhbY-like,RNA-binding, CRM domain; CRS1_YhbY,RNA-bi,CUFF.54882.1
(846 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 803 0.0
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 751 0.0
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 481 e-135
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 464 e-131
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 436 e-122
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 323 3e-88
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 110 5e-24
AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 110 6e-24
AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 97 5e-20
AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 96 8e-20
AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 85 2e-16
AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 60 5e-09
AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (C... 55 2e-07
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C... 53 1e-06
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/850 (52%), Positives = 568/850 (66%), Gaps = 81/850 (9%)
Query: 1 MAVVPTRQLHPAAT---FFDSFHTSHRFHSLRFFRYTSSIHCCGNFTSCKTRNWVLCHSF 57
MA+ P+ P F SF +S F RF RY+SSI + SCK +F
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFCF---RFLRYSSSI----SLGSCK------GVTF 47
Query: 58 SGRRPSTSSTFIGVKKPIFLCNSARSFCSESWLRRWNEPTCKHNRPKPPRAVLDYQGSGN 117
S R +S + CN+ WL WN K N+PKPP+ V++Y+ G
Sbjct: 48 SSRNDQIASRRFSFSRD---CNNG------VWLENWNR-IQKRNQPKPPKVVVNYRKEGR 97
Query: 118 GHESKYXXXXXXXXXXXXXXXXXXXXXXTMDRIVEKLKKFGYVDGIEEQSRTKERVIEKG 177
S+ TM++IVEKLKK+GY++ ++ + +ER IEKG
Sbjct: 98 FSGSEIVSGDDNRSRDGDGS--------TMEKIVEKLKKYGYMEEVQNKEIEQERRIEKG 149
Query: 178 SVEDIFYVEEGLLPNTRGGFSPESPFGIGSVGSDNRVVRFPWEKPMDNEVEETRPQ---R 234
SVEDIFYVEEG LPNTRGGF+ ES G +V N V FPWEK E +E + +
Sbjct: 150 SVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAK 209
Query: 235 RKSKTYXXXXXXXXXXXXXXXXXXFQKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKF 294
++++ F+ K R+ GVTQ VD I EKW+++EIVRLK
Sbjct: 210 KENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKI 269
Query: 295 EGQAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVTYEDPSLQQNKRIYRKSENSSKF 354
EG +ALNM++MHEILE+KTGGLVIWRSG S+SLYRGV+YE PS + NK+ R+ E
Sbjct: 270 EGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREET---- 323
Query: 355 LSPPSDKLIYRKSENSSKLLSPPSDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEAN 414
P + +I E ++ + SD++++
Sbjct: 324 ---PPEAVIENHDETTT--MVDKSDEKVH------------------------------- 347
Query: 415 TPMEKLESTNDQKEKDYVPKVNYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPG 474
P + E+T+ +K+ P V YEDE+D+LLD LGPR+ DWPG PLPVDAD+LP +P
Sbjct: 348 LPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPD 407
Query: 475 YQPPFRVLPFGVRASLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIA 534
Y+PPFRVLP+GVR+SLG KEATAL+R+AR +PPHFALGRSRQLQGLA AM++LWE+S +A
Sbjct: 408 YEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLA 467
Query: 535 KIALKRGVQLTTSERMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIA 594
KIA+KRGVQ TTSERMAE++KKLTGG +LSRNKDFLVF+RGKNFLS +V AL+E+ER
Sbjct: 468 KIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFV 527
Query: 595 KAMEDEEEQARLRASS-LLIPAINTSQLSAGAGTLGETLDADAKWGKTLDER-HKQKVMI 652
+ ++DEEEQARLR SS L++P+ + AGTLGETLDA KWGK LD+ H +V
Sbjct: 528 RTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQ 587
Query: 653 EVEQLRHANIVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFR 712
EVE LRH N+VRKLE+KL+ AERK+++AE+ L KVE LKP++ + DPESITDEERFMFR
Sbjct: 588 EVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFR 647
Query: 713 KLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEAESGG 772
KLGL+MKAFLLLGRRGVFDGT+ENMHLHWKYRELVKI+VKAKTF+ VKKVALALEAESGG
Sbjct: 648 KLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGG 707
Query: 773 VLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQRHEALMTHISTLQ 832
+LVS+DKV+KGY+IIVYRG+DY+RP+ LRPKNLLTKRKALARSIELQR E L+ HIST+Q
Sbjct: 708 ILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQ 767
Query: 833 KKVVKISTEI 842
K ++ EI
Sbjct: 768 AKAKQLRAEI 777
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/734 (55%), Positives = 513/734 (69%), Gaps = 90/734 (12%)
Query: 146 TMDRIVEKLKKFGYVDGIEEQSRT--KERVIEKGSVEDIFYVEEGLLPNTRGGFSPESPF 203
TM++IVEKLKK+G+VD + Q + +ER IEK SVE+ FYVEE RGGFS ESPF
Sbjct: 124 TMEKIVEKLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEE-----RRGGFSEESPF 178
Query: 204 GIGSVGSDNRVVRFPWEKPMDNEVEETR----PQRRKSKTYXXXXXXXXXXXXXXXXXXF 259
G+ G+D V+FPWEK E +E +++S+ F
Sbjct: 179 GVYG-GNDE--VKFPWEKVSSMEKKELVNGEWTAKKESRYSLAEMTLSEFELNRLRNVMF 235
Query: 260 QKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIW 319
+ K K RV +GVTQAVVD I EKW+ SEIVRLK EG +ALNM+RMHEILERKTGGLVIW
Sbjct: 236 RTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295
Query: 320 RSGNSVSLY--RGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSENSSKLLSPP 377
RSG S++LY +G + D S NK++YR++E L P+ + + S +L++ P
Sbjct: 296 RSGTSIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSL--PTSTV-----DQSVQLVNLP 348
Query: 378 SDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEANTPMEKLESTNDQKEKDYVPKVNY 437
+EK + K++ +V Y
Sbjct: 349 Q--------------------------------------LEKEPTVVGNKDRTSPQEVEY 370
Query: 438 EDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRASLGLKEATA 497
EDE+++LL+GLGPRYTDW G PLPVDAD+LP VPGY+PPFR LP+GVR++LG KEAT+
Sbjct: 371 EDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATS 430
Query: 498 LKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSERMAEEIKKL 557
L+RIA LPPHFALGRSRQLQGLA AM+KLW++S IAK+ALKRGVQLTTSERMAE+IK+L
Sbjct: 431 LRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRL 490
Query: 558 TGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRASS-LLIPAI 616
TGG LLSRNKDFLVF+RGK+FLS +V +AL+E+E + + ++DEEEQARLRASS L++P+I
Sbjct: 491 TGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSI 550
Query: 617 NTSQLSA---------------------------GAGTLGETLDADAKWGKTLD-ERHKQ 648
+Q A AGTLGETLDA KWGK LD + H +
Sbjct: 551 KANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVE 610
Query: 649 KVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEER 708
++ EVE++R A +VRKLE+KL+ AE+K+++AE+AL KVEESLKP++ + D E IT+EER
Sbjct: 611 EMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEER 670
Query: 709 FMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEA 768
FMF+KLGL+MKAFLLLGRRGVFDGT+ENMHLHWKYREL+KILVKAKT E +KVA+ALEA
Sbjct: 671 FMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEA 730
Query: 769 ESGGVLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQRHEALMTHI 828
ESGG+LVSVDK+SKGY++IVYRGKDY+RP+TLRPKNLLTKRKALARS+ELQ+ EAL+ HI
Sbjct: 731 ESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKHI 790
Query: 829 STLQKKVVKISTEI 842
+Q + ++ EI
Sbjct: 791 EAIQTRSEQLRAEI 804
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/578 (44%), Positives = 370/578 (64%), Gaps = 47/578 (8%)
Query: 267 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 326
+ +G+TQAV+++I++ WR E+VRLKF A +MK HEI+ER+TGG+VIWR+G+ +
Sbjct: 264 IPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMV 323
Query: 327 LYRGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSENSSKLLSPPSDKQIYRXX 386
+YRG+ Y+ P + N+ K +S D+ K S+ L+ D I
Sbjct: 324 VYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQSAPLVI--KDPII---- 377
Query: 387 XXXXXXXXXXXXXXALKLSDVASYSEANTPMEKLESTNDQKEKDYVPKVNYEDEVDKLLD 446
P+ K T + E E + LLD
Sbjct: 378 ---------------------------KNPIRKENMTEE------------EVEFNSLLD 398
Query: 447 GLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRASLGLKEATALKRIARGLP 506
LGPR+ +W G LPVDAD+LP T+PGY+ PFR+LP G+R++L E T L++I + LP
Sbjct: 399 SLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLP 458
Query: 507 PHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSERMAEEIKKLTGGTLLSRN 566
HFALGR+R QGLA A++++WE+S IAKIA+KRG+Q T ++ MA+E+K LTGG LL RN
Sbjct: 459 CHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRN 518
Query: 567 KDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRASSLLIPAINTSQLSAGAG 626
K ++V +RGK+FL + V L ER+ + K ++D EE+ R R + P ++ A AG
Sbjct: 519 KYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPV--GDKVPAEAG 576
Query: 627 TLGETLDADAKWGKTLDERHKQKVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMK 686
TL E +A A+WGK + H++K++ E ++ +A +V++++ KL+LA+ K RAEK L K
Sbjct: 577 TLAEFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSK 636
Query: 687 VEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYREL 746
+E S+ P+ D E I++EER MFRK+GL+MKA+L +G RGVFDG IENMHLHWK+REL
Sbjct: 637 IEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHREL 696
Query: 747 VKILVKAKTFEQVKKVALALEAESGGVLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLL 806
VK++ K K V++ A LE ESGGVLV+++KV KG+++I YRGK+YRRP +LRP+NLL
Sbjct: 697 VKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLL 756
Query: 807 TKRKALARSIELQRHEALMTHISTLQKKVVKISTEIVC 844
TK KAL RSI +QRHEAL HIS L++ + ++ +++
Sbjct: 757 TKAKALKRSIAMQRHEALSQHISELERTIEQMQSQLTS 794
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 287/724 (39%), Positives = 409/724 (56%), Gaps = 91/724 (12%)
Query: 147 MDRIVEKLKKFGYVDGIEEQSRTKERVIE-----KGSVEDIFYVEEGLLPNTRGGFSPES 201
+ RI EKL+ G+V EE+ + R I K S +IF LP R G + ++
Sbjct: 60 IQRIAEKLRSLGFV---EEKHDSPTRRITGEESGKNSPGEIFVPLPKQLPIHRVGHTIDT 116
Query: 202 PFGIGSV-----GSDNRVVRFP-----WEKPMDNEVEETRPQRRKSKTYXXXXXXXX--X 249
+ S GS + R+ W+K ET +R+K +
Sbjct: 117 SWSTPSYPVPKPGSGTAISRYHELKRVWKK-------ETEMERKKEEKVPSLAELTLPPA 169
Query: 250 XXXXXXXXXFQKKHKRRVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEIL 309
+ K ++G +G+T+ +V+ IHE+WRT+E+V++ E + +NMKR H++L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query: 310 ERKTGGLVIWRSGNSVSLYRGVTYEDPSLQQNKRIYRKSENSSKFLSPPSDKLIYRKSEN 369
E KTGGLVIWRSG+ + LYRGV Y+ P ++ + ++ + + + D+ + E
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSM----DQGVVDSREK 285
Query: 370 SSKLLSPPSDKQIYRXXXXXXXXXXXXXXXXALKLSDVASYSEANT---PMEKLESTNDQ 426
S +++ ++ S N PM +
Sbjct: 286 QS--------------------------------IAESSAPSITNKMVKPMLTQGVGSPD 313
Query: 427 KEKDYVP-KVNYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFG 485
K + +P +V +E D+LL+GLGPR+TDW +PLPVD D+LPA VP Y+ PFR+LP+G
Sbjct: 314 KVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYG 373
Query: 486 VRASLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLT 545
V L E T ++R+ R LP HFALGR+R LQGLAVA++KLWE+ +AKIA+KRGVQ T
Sbjct: 374 VSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNT 433
Query: 546 TSERMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQAR 605
SE MAEE+K LTGGTL+SR+KDF+V +RGK+FL + V+ A+ ER R ME+
Sbjct: 434 NSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEN------ 487
Query: 606 LRASSLLIPAINTSQLSAGAGTLGETLDADAKWGKTLDERHKQKVMIEVEQL--RHAN-- 661
SS+ + ++ + E ++ +AK QK I+ Q+ R N
Sbjct: 488 ---SSVHGNKLTENEEEIKPRAVKEDIELEAK---------DQKDHIQTHQMKSRQRNSP 535
Query: 662 --IVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMK 719
I+ K KLS+A K AEK L +E P D E IT++E++M RK+GL+MK
Sbjct: 536 EAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMK 595
Query: 720 AFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEAESGGVLVSVDK 779
FLLLGRRGVFDGTIENMHLHWKYRELVKI+ + E KVA LEAESGG+LV+V+
Sbjct: 596 PFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEM 655
Query: 780 VSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQRHEALMTHISTLQKKVVKIS 839
VSKGY+IIVYRGK+Y RP LRP+ LL+KR+AL RS+E QR ++L H+ L + +++
Sbjct: 656 VSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELN 715
Query: 840 TEIV 843
++V
Sbjct: 716 RQLV 719
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/439 (50%), Positives = 311/439 (70%), Gaps = 10/439 (2%)
Query: 412 EANTPMEKLESTND--QKEKDY---VPKVNYED--EVDKLLDGLGPRYTDWPGCEPLPVD 464
EAN + + D Q++ +Y VPK + E++ LLD +GPR+ DW GC P PVD
Sbjct: 346 EANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVD 405
Query: 465 ADMLPATVPGYQPPFRVLPFGVRASLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAM 524
AD+LP V GY+ PFR+LP GV+ L E T ++R+AR PPHFALGRSR+LQGLA AM
Sbjct: 406 ADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAM 465
Query: 525 IKLWEESSIAKIALKRGVQLTTSERMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVT 584
+KLW +S+IAKIA+KRGV+ T +ERMAEE+K+LT G L+SRNK+++VF+RG +F+ V
Sbjct: 466 VKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVA 525
Query: 585 QALLERER-IAKAMEDEEEQARLRASS--LLIPAINTSQLSAGAGTLGETLDADAKWGKT 641
+AL ER++ I + ++ +E+QAR AS+ L + + AGTL ET+ A ++W
Sbjct: 526 EALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPN 585
Query: 642 LDERHKQKVMIEVEQLRHANIVRKLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPE 701
+++ E ++ A ++R LE +L ++K+ RAE+ L KV++ L PS+ D E
Sbjct: 586 ASSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSE 645
Query: 702 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKK 761
IT+EER ++RK+GL M FLLLGRR V+DGTIENMHLHWK+RELVK++V+ K+ QVK
Sbjct: 646 IITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKH 705
Query: 762 VALALEAESGGVLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQRH 821
+A++LEAESGGVLVSVDK KGY+II+YRGK+Y+ P LRP NLLT++KA ARSIELQR
Sbjct: 706 IAISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRR 765
Query: 822 EALMTHISTLQKKVVKIST 840
EAL H++ L++++ + T
Sbjct: 766 EALKYHVADLEERIELLKT 784
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 9/93 (9%)
Query: 266 RVGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSV 325
+VGS+G+TQA+V+ IHEKW E+V+LKF +LNMKR HE+LE+KTGGLVIWRSG+SV
Sbjct: 264 KVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSV 323
Query: 326 SLYRGVTY---------EDPSLQQNKRIYRKSE 349
LYRG++Y + +L+ N I+R E
Sbjct: 324 VLYRGISYKLKCVQTFIKQNNLEANPEIHRSVE 356
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 261/420 (62%), Gaps = 7/420 (1%)
Query: 429 KDYVPKVNYEDEVDKLLDGLGPRYTDWPGCEPLPVDADMLPATVPGYQPPFRVLPFGVRA 488
+D + YE E D+LLDGLGPRY DW P PVDAD+LP V GY P R P RA
Sbjct: 300 QDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRA 359
Query: 489 SLGLKEATALKRIARGLPPHFALGRSRQLQGLAVAMIKLWEESSIAKIALKRGVQLTTSE 548
L +E T L+ IA+ LP HF LGR+ LQGLA A++KLWE+ IAKIA+K G T +E
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 549 RMAEEIKKLTGGTLLSRNKDFLVFFRGKNFLSADVTQALLERERIAKAMEDEEEQARLRA 608
MA+E++ LTGG L+ RNK +V +RGK+FLS +V + +RER+ + EE R
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESD 479
Query: 609 SSLLIPAINTSQL--SAGAGTLGETLDADAKWGKTLDERHKQKVMIEVEQLRHANIVRKL 666
LL N QL + +GTL E + K+G+ +D R+ + E E+ R ++
Sbjct: 480 IELLEVVTNGKQLKETNKSGTLLEFQELQRKFGE-MDPRNLE---TEAEKARLEKELKSQ 535
Query: 667 EQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLLGR 726
E KLS+ + KI ++ L K+ KPS+ D E +T+EER R++GL+M + L+LGR
Sbjct: 536 EHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 595
Query: 727 RGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEAESGGVLVSVDKVSKGYSI 786
RGVF G +E +H HWK+RE+ K++ K F +V A ALE ES GVL+S++K+ +G++I
Sbjct: 596 RGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAI 655
Query: 787 IVYRGKDYRRPST-LRPKNLLTKRKALARSIELQRHEALMTHISTLQKKVVKISTEIVCL 845
++YRGK+Y+RPS+ L +NLLTKRKAL RS+ +QR +L ++ + + +V L
Sbjct: 656 LIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNL 715
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 267 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 326
V +GVT+ VV++I W+ +E+ ++F+ NM+R EI+E KTGGLV+ +
Sbjct: 228 VRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLV 287
Query: 327 LYRG 330
+YRG
Sbjct: 288 VYRG 291
>AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223998-9225505 FORWARD LENGTH=444
Length = 444
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 101/154 (65%), Gaps = 8/154 (5%)
Query: 667 EQKLSLAERKIMRAEKALMKVEESLKPSDYKA---DPESITDEERFMFRKLGLRMKAFLL 723
E+K+ RK + E+ LM+ + L+PS+ DPE +T EE F + K+GL+ K ++
Sbjct: 138 EEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 724 LGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEAESGGVLVSVDKVSKG 783
+GRRG++ G I NMHLHWK + +++++K T ++VK++A+ L +GG+++ V +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEG 254
Query: 784 YSIIVYRGKDYRRPST--LRPKNLLTKRKALARS 815
+II+YRGK+Y +P T + P+ L ++KAL +S
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 288
>AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9224294-9225505 FORWARD LENGTH=380
Length = 380
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 101/154 (65%), Gaps = 8/154 (5%)
Query: 667 EQKLSLAERKIMRAEKALMKVEESLKPSDYKA---DPESITDEERFMFRKLGLRMKAFLL 723
E+K+ RK + E+ LM+ + L+PS+ DPE +T EE F + K+GL+ K ++
Sbjct: 74 EEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 133
Query: 724 LGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQVKKVALALEAESGGVLVSVDKVSKG 783
+GRRG++ G I NMHLHWK + +++++K T ++VK++A+ L +GG+++ V +G
Sbjct: 134 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLD---VHEG 190
Query: 784 YSIIVYRGKDYRRPST--LRPKNLLTKRKALARS 815
+II+YRGK+Y +P T + P+ L ++KAL +S
Sbjct: 191 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 224
>AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:7621780-7623051 REVERSE LENGTH=343
Length = 343
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 9/168 (5%)
Query: 665 KLEQKLSLAERKIMRAEKALMKVEESLKPSDYKADPESITDEERFMFRKLGLRMKAFLLL 724
++ KL A+RK + L K + P++ DPES+T+EE+ ++ G + K F+L+
Sbjct: 145 RIRYKLEKAKRKEEWLIEKLRKYDVPKSPAE-PYDPESLTEEEQHYLKRTGEKRKNFVLV 203
Query: 725 GRRGVFDGTIENMHLHWKYRELVKILVK-AKTFEQVKKVALALEAESGGVLVSVDKVSKG 783
GRRGVF G + N+HLHWK E VK++ K QV + A L S G+++ V +
Sbjct: 204 GRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNN-- 261
Query: 784 YSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQRHEALMTHISTL 831
+I++YRGK+Y RP + P + L+K KAL E R+E + H S
Sbjct: 262 -TIVLYRGKNYVRPEVMSPVDTLSKDKAL----EKYRYEQSLEHTSEF 304
>AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:12176642-12178031 REVERSE LENGTH=372
Length = 372
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 700 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQV 759
P IT EERF +K+G + ++ +GRRGVF G I NMHLHWK E VK++ QV
Sbjct: 161 PHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQV 220
Query: 760 KKVALALEAESGGVLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIELQ 819
++ A L SGGV V++ +II YRGK Y +P + P + L+K++A +S Q
Sbjct: 221 QQYAEELAKLSGGVPVNIIGDD---TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQ 277
Query: 820 RHEALMTHISTLQKKV 835
E++ I+ +K++
Sbjct: 278 SLESVRHFIAIAEKEL 293
>AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:10208010-10209899 REVERSE LENGTH=491
Length = 491
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Query: 699 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKTFEQ 758
DPE T E+ F+K+G + K ++ +G RGVF G ++NMH+HWK+ E V++ E+
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 759 VKKVALALEAESGGVLVSVDKVSKGYSIIVYRGKDYRRPSTLRPKNLLTKRKALARSIEL 818
+K++A + SGGV++++ V +II++RG++YR+P L P N LTKRKAL ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 819 QRHEALMTHISTLQKKVVKI 838
Q E+ +I ++++ ++
Sbjct: 205 QALESQKLNIKKTEQQLRRM 224
>AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr5:22293346-22294909
FORWARD LENGTH=358
Length = 358
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 267 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 326
+G GVT ++D IH W+ +E VR+K G L+M + LE K+GG +++R+ N +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILV 225
Query: 327 LYRGVTYE 334
LYRG Y+
Sbjct: 226 LYRGRNYD 233
>AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr2:8644464-8647090 FORWARD
LENGTH=701
Length = 701
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 267 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 326
+G G+T +++ IH+ W+ + ++K +G ++M + E LE K GG VI+R G +
Sbjct: 264 MGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLF 323
Query: 327 LYRGVTY 333
L+RG Y
Sbjct: 324 LFRGRNY 330
>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr1:8312199-8314740 REVERSE
LENGTH=564
Length = 564
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 267 VGSSGVTQAVVDRIHEKWRTSEIVRLKFEGQAALNMKRMHEILERKTGGLVIWRSGNSVS 326
+G G T +++ IH W+ + +++ +G ++M + +LE KTGG +I R G V
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVY 283
Query: 327 LYRGVTY 333
L+RG Y
Sbjct: 284 LFRGRNY 290