Miyakogusa Predicted Gene

Lj5g3v1145220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1145220.1 Non Chatacterized Hit- tr|K4DDC4|K4DDC4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,30.19,3e-18,seg,NULL,
NODE_86116_length_1632_cov_26.860907.path2.1
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    92   7e-19

>AT2G43990.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6
           growth stages; Has 1419 Blast hits to 494 proteins in
           144 species: Archae - 0; Bacteria - 300; Metazoa - 246;
           Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes
           - 738 (source: NCBI BLink). | chr2:18211974-18213872
           FORWARD LENGTH=632
          Length = 632

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 156/371 (42%), Gaps = 80/371 (21%)

Query: 24  TLLPLPTEALVRWLSSPCKKEKKILK--SENGLNQSQGLAEXXXXXXXXXXXXXXXXFWN 81
           +++PLP +A V WL SPC +EK+  K  S++G +Q Q + E                  +
Sbjct: 319 SVMPLPADASVHWLLSPCDEEKEHEKEISDDGFSQFQQIVECVGHETPSP-------LSD 371

Query: 82  VSDSSDLSGAANG-----------TWSKMSSSVSPSRLSKFQVAFDSIAPPSYPSIMLSP 130
            S SSDL   ++G           T  ++SSS+SP+ L +F+      +     S     
Sbjct: 372 RSASSDLCNISSGRSLSPMDIYKETTRRISSSLSPNELFRFRRFIHLSSCDGEASAF--- 428

Query: 131 NSTPSCRAFSSAKGKSDQHRLNDDNSPFSLNSVGSRNVIQTPQSDSSSDLPVGLSLVSAY 190
           +++P+C    S      +H   D +SP S++++GS NVIQTP+S+SS D   GLS   A 
Sbjct: 429 DTSPTCELDPS------EHLKGDKSSPLSVDTLGSENVIQTPESNSSFDNYFGLSCSQAE 482

Query: 191 NGKEDSSNPELNSFSEILQSENLLLKSSMPLEDSVNSSFQFDCLTVPYESIDLSKLRKLL 250
             K+     +L S +   QS  L  +      +   SSF FD L    +SIDLS+ ++ L
Sbjct: 483 IQKKHDVGSDLESLTMKFQSAGLSPRIQASSWEPSRSSFNFDYLATSSDSIDLSQFQRGL 542

Query: 251 DDPDPWLXXXXXXXXXXXXXRISWREGSM----SQLFDWDEFDCCRCLSDEEDLGNDRGS 306
            D                  R+      M    SQ     EFD                 
Sbjct: 543 VDRSSCHPHVTLDKVSRTHLRVEQTNSHMPEMKSQQITDTEFD----------------- 585

Query: 307 NRLASTQTEDNADGSGKLNCDVGLSETEGNELEIDGHDKEMLPSLLSCSGAESISTDGGG 366
                   +++ + +  L                 G  +E+LP    CS AESISTDGGG
Sbjct: 586 -------IQNHKESAASL-----------------GKGRELLP----CSAAESISTDGGG 617

Query: 367 LAASRDDDSDW 377
           L  S  +DS+W
Sbjct: 618 LICS--EDSNW 626