Miyakogusa Predicted Gene

Lj5g3v1135080.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1135080.4 tr|Q53M54|Q53M54_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=Os11g0247500 PE=2
SV=1,43.75,0.0000000004,seg,NULL,CUFF.54869.4
         (521 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   154   1e-37

>AT2G43990.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6
           growth stages; Has 1419 Blast hits to 494 proteins in
           144 species: Archae - 0; Bacteria - 300; Metazoa - 246;
           Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes
           - 738 (source: NCBI BLink). | chr2:18211974-18213872
           FORWARD LENGTH=632
          Length = 632

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 214/484 (44%), Gaps = 95/484 (19%)

Query: 62  ILGRINDNAGNGEVEENSDTSICRTPPIHNSVSPEIQCVST--------TPACYGAGYIV 113
           I  R ++   +G +  NS +   RTPP+  SVSPEIQC S+        + ACY AG+++
Sbjct: 209 IYRRKSEATDDGRLSSNSSSYQDRTPPVQASVSPEIQCGSSMNLSASAQSQACYAAGHLL 268

Query: 114 SGVTDKRKCRPRGILTVEENCSEFAKMT----ADSFXXXXXXXXXXXXXXXSPTLLPLPT 169
           SGV+DKRKC+P+GILTV EN  E  K      +D F                 +++PLP 
Sbjct: 269 SGVSDKRKCKPKGILTVGENGFEVGKGKILNDSDEFDEGDFGNDGSYDDI---SVMPLPA 325

Query: 170 EALVRWLSSPCKKEKKILK--SENGLNQSQGLAEXXXXXXXXXXXXXXXXFWNVSDSSDL 227
           +A V WL SPC +EK+  K  S++G +Q Q + E                  + S SSDL
Sbjct: 326 DASVHWLLSPCDEEKEHEKEISDDGFSQFQQIVECVGHETPSP-------LSDRSASSDL 378

Query: 228 SGAANG-----------TWSKMSSSVSPSRLSKFQVAFDSIAPPSYPSIMLSPNSTPSCR 276
              ++G           T  ++SSS+SP+ L +F+      +     S     +++P+C 
Sbjct: 379 CNISSGRSLSPMDIYKETTRRISSSLSPNELFRFRRFIHLSSCDGEASAF---DTSPTCE 435

Query: 277 AFSSAKGKSDQHRLNDDNSPFSLNSVGSRNVIQTPQSDSSSDLPVGLSLVSAYNGKEDSS 336
              S      +H   D +SP S++++GS NVIQTP+S+SS D   GLS   A   K+   
Sbjct: 436 LDPS------EHLKGDKSSPLSVDTLGSENVIQTPESNSSFDNYFGLSCSQAEIQKKHDV 489

Query: 337 NPELNSFSEILQSENLLLKSSMPLEDSVNSSFQFDCLTVPYESIDLSKLRKLLDDPDPWL 396
             +L S +   QS  L  +      +   SSF FD L    +SIDLS+ ++ L D     
Sbjct: 490 GSDLESLTMKFQSAGLSPRIQASSWEPSRSSFNFDYLATSSDSIDLSQFQRGLVDRSSCH 549

Query: 397 XXXXXXXXXXXXXRISWREGSM----SQLFDWDEFDCCRCLSDEEDLGNDRGSNRLASTQ 452
                        R+      M    SQ     EFD                        
Sbjct: 550 PHVTLDKVSRTHLRVEQTNSHMPEMKSQQITDTEFD------------------------ 585

Query: 453 TEDNADGSGKLNCDVGLSETEGNELEIDGHDKEMLPSLLSCSGAESISTDGGGLAASRDD 512
            +++ + +  L                 G  +E+LP    CS AESISTDGGGL  S  +
Sbjct: 586 IQNHKESAASL-----------------GKGRELLP----CSAAESISTDGGGLICS--E 622

Query: 513 DSDW 516
           DS+W
Sbjct: 623 DSNW 626