Miyakogusa Predicted Gene

Lj5g3v1118400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1118400.1 Non Chatacterized Hit- tr|Q8L8R3|Q8L8R3_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,40.48,2e-18,seg,NULL,CUFF.54784.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04000.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    92   2e-19
AT5G44060.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    88   2e-18

>AT1G04000.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:1028415-1028873 REVERSE
           LENGTH=152
          Length = 152

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 1   MNTKTMRLPPRRVLTPSTTTNKRKERDGPFERPAPVSIPIPVPGPTSKLPKPDNKPITPR 60
           MNTKTMRLPPRRVLT     +KRKERD      A +S     P        P+       
Sbjct: 1   MNTKTMRLPPRRVLT----ADKRKERD------AFISSVTDNP--------PEIAKFPSP 42

Query: 61  LGAEPIQNTAAGATTSKVSVSEPMMMPPSNQL-LAGYLAHEYLTKGTLLGQPWVPAKTDG 119
                       +  S  + +EP+    SNQL LAGYL+HEYLT+GTL G+ W  A+   
Sbjct: 43  PPKLVPPPVNPISKKSSTAAAEPI---GSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQA 99

Query: 120 PTKXXXXXXXXXXXXXXXXXXXXXXXXXXLLRGGGTHLPGVVNPTQLARFLHL 172
            +                           LLR  G  LPG+VNP QLARFL L
Sbjct: 100 ESSKIKPSHTVEPAEECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152


>AT5G44060.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:17731209-17731661
           FORWARD LENGTH=150
          Length = 150

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 84/177 (47%), Gaps = 32/177 (18%)

Query: 1   MNTKTMRLPPRRVLTPSTTTNKRKERDGPFERPAPVSIPIPVPGPTSKLPKPDNKPITPR 60
           MNTKTMRLPPRRV T      K+ E           ++  P P PT  + K    PI PR
Sbjct: 1   MNTKTMRLPPRRV-TSGAVAGKQTES----------AVINPPPPPTKSIVK--KTPIIPR 47

Query: 61  LGAEPIQNTAAGATTSKVSVSEPMMMPPSNQLLAGYLAHEYLTKGTLLGQPWVPAKTD-G 119
                        TT+ V+++EP+    SNQLLAGYLAHE+L  GTL G+ W P K   G
Sbjct: 48  -----------PTTTATVALAEPVC---SNQLLAGYLAHEFLNNGTLFGELWNPTKAQAG 93

Query: 120 PTKXXX----XXXXXXXXXXXXXXXXXXXXXXXLLRGGGTHLPGVVNPTQLARFLHL 172
           P                                +LR  GTHLPG+VNP+QLARFL L
Sbjct: 94  PLTTQSIDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150