Miyakogusa Predicted Gene

Lj5g3v1117260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1117260.1 NODE_55171_length_848_cov_47.544811.path2.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...   288   2e-78
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   252   1e-67
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   225   2e-59
AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...   119   2e-27
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...    67   1e-11

>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/210 (69%), Positives = 159/210 (75%)

Query: 1   MNLFSKKPTAKEALRESKREMANATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEAATKT 60
           MN+F+KKP  +E LRESKREM  ATRGIE+EIGSLQ EEKKLV EIKRTAK+GNE ATK 
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 61  LARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMDPAK 120
           LARQL+RLRQQIANLQGSRAQMRGIATHTQAMHAH+SV                 MDPAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 121 QAKVMLEFQKQSTQMDMTTEMMSXXXXXXXXXXXXXXXXXXLTNQVLDEIGVDVASQLST 180
           QAKVM EFQKQS QMDMTTEMMS                  LTNQVLDEIG+D+ASQLS+
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 181 APKGRVSTKNTENVSSSGIDDLEKRLAALR 210
           APKG++  K  E+V SSGID+LEKRLAALR
Sbjct: 181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210


>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 155/220 (70%), Gaps = 10/220 (4%)

Query: 1   MNLFSKKPTAKEALRESKREMANATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEAATKT 60
           MN+F KK T K+ALR SKREMA ATRGIEREI SLQLEEK+LVAEIK+TAKTGNEAATK 
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 61  LARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMDPAK 120
           LARQLVRLRQQI NLQGSRAQ+RG+ THTQA++A +S+                QM P K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 121 QAKVMLEFQKQSTQMDMTTEMMSXXXXXXXXXXXXXXXXXXLTNQVLDEIGVDVASQLST 180
           QAKV+ +FQKQS Q+DMT EMMS                  LTNQVLDEIGV VASQLS+
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 181 APKGRVSTK----------NTENVSSSGIDDLEKRLAALR 210
           APKGR++TK            +N  SS +D+LEKRLA+LR
Sbjct: 181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/200 (60%), Positives = 139/200 (69%), Gaps = 10/200 (5%)

Query: 21  MANATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEAATKTLARQLVRLRQQIANLQGSRA 80
           MA ATRGIEREI SLQLEEK+LVAEIK+TAKTGNEAATK LARQLVRLRQQI NLQGSRA
Sbjct: 1   MAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRA 60

Query: 81  QMRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMDPAKQAKVMLEFQKQSTQMDMTTE 140
           Q+RG+ THTQA++A +S+                QM P KQAKV+ +FQKQS Q+DMT E
Sbjct: 61  QIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIE 120

Query: 141 MMSXXXXXXXXXXXXXXXXXXLTNQVLDEIGVDVASQLSTAPKGRVSTK----------N 190
           MMS                  LTNQVLDEIGV VASQLS+APKGR++TK           
Sbjct: 121 MMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAAT 180

Query: 191 TENVSSSGIDDLEKRLAALR 210
            +N  SS +D+LEKRLA+LR
Sbjct: 181 NKNSESSEVDELEKRLASLR 200


>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 11/220 (5%)

Query: 2   NLFSKKPTAKEALRESKREMANATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEAATKTL 61
           ++F K+ T  E LRE+KR +  + R IERE   LQ +EKKL+ EIK+TAK G   A K +
Sbjct: 4   SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVM 63

Query: 62  ARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMDPAKQ 121
           A+ L+R R QI      ++Q++G++   Q + +  ++                QM+    
Sbjct: 64  AKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSL 123

Query: 122 AKVMLEFQKQSTQMDMTTEMMSXXXXXXXXXXXXXXXXXXLTNQVLDEIGVDVASQLSTA 181
            K+M EF++Q+ +M+M +E+M                   L +QVLDEIG+D+  +L  A
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA 183

Query: 182 PKGRVSTKNTENV----------SSSGID-DLEKRLAALR 210
           P G V+    +N            S GID DL+ RL  LR
Sbjct: 184 PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223


>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 1   MNLFSKKPTAKEALRESKREMANATRGIEREIGSLQLEEKKLVAEIKRTAKTGNEAATKT 60
           MN+   KP  K+ LR+ +R++    R IER+I  +Q EE+ +   IK  AK  +  + K 
Sbjct: 5   MNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKA 64

Query: 61  LARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAHSSVXXXXXXXXXXXXXXXXQMDPAK 120
           LA+++V  R+ +  L  ++AQM  I+ H     A +                   M   +
Sbjct: 65  LAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQ 124

Query: 121 QAKVMLEFQKQSTQMDMTTEMMSXXXXXXXXXXXXXXXXXXLTNQVLDEIGVDVASQLST 180
            A  M EF K+ T+  +  E ++                    ++VL  I  + A++L  
Sbjct: 125 MAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPV 184

Query: 181 A--------PKGRVSTKNTENVSSSGIDDLEK------RLAALRN 211
           A        P  + ST   E   + G+DD E+      RLA +R+
Sbjct: 185 AVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229