Miyakogusa Predicted Gene

Lj5g3v1096020.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1096020.2 tr|C3US34|C3US34_9BRAS At4g21150-like protein
(Fragment) OS=Capsella grandiflora PE=4 SV=1,57.58,0.004,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.2
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21150.3 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   212   1e-55
AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   212   1e-55
AT4G21150.2 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   211   2e-55

>AT4G21150.3 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278646-11283599 FORWARD LENGTH=691
          Length = 691

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 132/165 (80%), Gaps = 2/165 (1%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK +   +  G +STTASV+RG+T+FAA  S  +NL GDKI+GLAKFFLG+G
Sbjct: 228 DDGTFYFDEKSVDASQ--GPISTTASVIRGLTSFAASESTGLNLPGDKIVGLAKFFLGVG 285

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQ+++LA LE N+ S+PLILSLP TV SLT K  +KV+V+TVLGS AP L+
Sbjct: 286 IPGDAKDFFNQIDALACLEDNKFSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALS 345

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKL QA S+ + DS++I+N+EL+++  S  YFLD+ PKN D+G Y
Sbjct: 346 VKLTQALSSKSVDSSVINNQELKFDADSATYFLDSFPKNFDIGKY 390


>AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278646-11283599 FORWARD LENGTH=691
          Length = 691

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 132/165 (80%), Gaps = 2/165 (1%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK +   +  G +STTASV+RG+T+FAA  S  +NL GDKI+GLAKFFLG+G
Sbjct: 228 DDGTFYFDEKSVDASQ--GPISTTASVIRGLTSFAASESTGLNLPGDKIVGLAKFFLGVG 285

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQ+++LA LE N+ S+PLILSLP TV SLT K  +KV+V+TVLGS AP L+
Sbjct: 286 IPGDAKDFFNQIDALACLEDNKFSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALS 345

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKL QA S+ + DS++I+N+EL+++  S  YFLD+ PKN D+G Y
Sbjct: 346 VKLTQALSSKSVDSSVINNQELKFDADSATYFLDSFPKNFDIGKY 390


>AT4G21150.2 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278649-11283599 FORWARD LENGTH=678
          Length = 678

 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 132/165 (80%), Gaps = 2/165 (1%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDGTFYFDEK +   +  G +STTASV+RG+T+FAA  S  +NL GDKI+GLAKFFLG+G
Sbjct: 227 DDGTFYFDEKSVDASQ--GPISTTASVIRGLTSFAASESTGLNLPGDKIVGLAKFFLGVG 284

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFFNQ+++LA LE N+ S+PLILSLP TV SLT K  +KV+V+TVLGS AP L+
Sbjct: 285 IPGDAKDFFNQIDALACLEDNKFSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALS 344

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKL QA S+ + DS++I+N+EL+++  S  YFLD+ PKN D+G Y
Sbjct: 345 VKLTQALSSKSVDSSVINNQELKFDADSATYFLDSFPKNFDIGKY 389