Miyakogusa Predicted Gene

Lj5g3v1096020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1096020.1 tr|A8XKX1|A8XKX1_CAEBR Protein CBR-OSTD-1
OS=Caenorhabditis briggsae GN=ostd-1 PE=4 SV=2,39.47,9e-19,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21150.3 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   146   6e-36
AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   146   6e-36
AT4G21150.2 | Symbols: HAP6 | ribophorin II (RPN2) family protei...   146   6e-36

>AT4G21150.3 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278646-11283599 FORWARD LENGTH=691
          Length = 691

 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 88/155 (56%)

Query: 1   MENSFLRLIGHVELDFPEAPEKAARPPTPPVDPYSRYGPKAEINHIFRVPEKRPAQEXXX 60
           MENS L  IGH+ELD PE PEKA RPP    +PYSRYGPKAEI+HIFR+PEK PA++   
Sbjct: 537 MENSLLSNIGHIELDLPERPEKATRPPLQSTEPYSRYGPKAEISHIFRIPEKLPAKQLSL 596

Query: 61  XXXXXXXXXXXXXXXXXXRLGVNLKNFPSSTVPATFAILFHGGIAAVXXXXXXXXXXXXX 120
                             RLGVN+K+FPSST  A  A+LFH GI AV             
Sbjct: 597 VFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAISALLFHCGIGAVLLLYVLFWLKLDL 656

Query: 121 FTTLKXXXXXXXXXXXVGHRILSHLAHTSAKLKSA 155
           FTTLK           VGHR LS LA  S KLKSA
Sbjct: 657 FTTLKALSLLGVFLLFVGHRTLSQLASASNKLKSA 691


>AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278646-11283599 FORWARD LENGTH=691
          Length = 691

 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 88/155 (56%)

Query: 1   MENSFLRLIGHVELDFPEAPEKAARPPTPPVDPYSRYGPKAEINHIFRVPEKRPAQEXXX 60
           MENS L  IGH+ELD PE PEKA RPP    +PYSRYGPKAEI+HIFR+PEK PA++   
Sbjct: 537 MENSLLSNIGHIELDLPERPEKATRPPLQSTEPYSRYGPKAEISHIFRIPEKLPAKQLSL 596

Query: 61  XXXXXXXXXXXXXXXXXXRLGVNLKNFPSSTVPATFAILFHGGIAAVXXXXXXXXXXXXX 120
                             RLGVN+K+FPSST  A  A+LFH GI AV             
Sbjct: 597 VFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAISALLFHCGIGAVLLLYVLFWLKLDL 656

Query: 121 FTTLKXXXXXXXXXXXVGHRILSHLAHTSAKLKSA 155
           FTTLK           VGHR LS LA  S KLKSA
Sbjct: 657 FTTLKALSLLGVFLLFVGHRTLSQLASASNKLKSA 691


>AT4G21150.2 | Symbols: HAP6 | ribophorin II (RPN2) family protein |
           chr4:11278649-11283599 FORWARD LENGTH=678
          Length = 678

 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 88/155 (56%)

Query: 1   MENSFLRLIGHVELDFPEAPEKAARPPTPPVDPYSRYGPKAEINHIFRVPEKRPAQEXXX 60
           MENS L  IGH+ELD PE PEKA RPP    +PYSRYGPKAEI+HIFR+PEK PA++   
Sbjct: 524 MENSLLSNIGHIELDLPERPEKATRPPLQSTEPYSRYGPKAEISHIFRIPEKLPAKQLSL 583

Query: 61  XXXXXXXXXXXXXXXXXXRLGVNLKNFPSSTVPATFAILFHGGIAAVXXXXXXXXXXXXX 120
                             RLGVN+K+FPSST  A  A+LFH GI AV             
Sbjct: 584 VFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAISALLFHCGIGAVLLLYVLFWLKLDL 643

Query: 121 FTTLKXXXXXXXXXXXVGHRILSHLAHTSAKLKSA 155
           FTTLK           VGHR LS LA  S KLKSA
Sbjct: 644 FTTLKALSLLGVFLLFVGHRTLSQLASASNKLKSA 678