Miyakogusa Predicted Gene
- Lj5g3v1073870.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1073870.2 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,86.53,0,seg,NULL; SMC
proteins Flexible Hinge Domain,SMCs flexible hinge;
SMC_N,RecF/RecN/SMC; SMC_hinge,SMC,CUFF.54763.2
(594 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 678 0.0
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 674 0.0
AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structura... 97 4e-20
AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromoso... 97 4e-20
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 89 1e-17
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 85 2e-16
AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 52 8e-07
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 52 8e-07
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
of chromosomes (SMC) family protein |
chr3:20235818-20243701 FORWARD LENGTH=1238
Length = 1238
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/594 (58%), Positives = 429/594 (72%), Gaps = 1/594 (0%)
Query: 1 MPSLLSP-GKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRT 59
MP++ SP GKI +LEMENFKSYKG Q++GPF DFTAIIGPNG+GKSNLMDAISFVLGVRT
Sbjct: 1 MPAIQSPSGKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT 60
Query: 60 GQLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGN 119
GQLRG+QLKDLIYAFDDR+KEQRGR+AFVRLVYQ+ + E++FTR+ITSAG SEYRID
Sbjct: 61 GQLRGSQLKDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNR 120
Query: 120 LVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQ 179
+VN D YN KL+SLGILVKARNFLVFQGDVESIASKNPKELTGL+E+ISGS+ELK++YE
Sbjct: 121 VVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEG 180
Query: 180 FXXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFN 239
+ALIYQKKKT+ HLRLQE+LK++K+E FLWQL+N
Sbjct: 181 LEEKKASAEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALKRERFLWQLYN 240
Query: 240 IENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNK 299
IENDI +R V+ EL F IA REKKI EKS+K
Sbjct: 241 IENDIEKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSK 300
Query: 300 LDKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADL 359
L K QPELL+ KEE+ RI + H+ +I ++Q+ I++L KM
Sbjct: 301 LGKIQPELLRFKEEIARIKAKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELF 360
Query: 360 QEKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENL 419
+K + YFR+KEEAGMKT KLR+E E+L+RQ+ D EA +N EEN
Sbjct: 361 NKKRQDSSGKLPMLDSQLQDYFRLKEEAGMKTIKLRDEHEVLERQRRTDLEALRNLEENY 420
Query: 420 QQLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLK 479
QQL NR+++L+ Q ++ + R +I SS+K K+ +LK ELR +Q+KH ++++ LK
Sbjct: 421 QQLINRKNDLDEQIKRFKDRQGEIETSSSKYKNETTSLKTELRALQEKHVNAREASAKLK 480
Query: 480 LKIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVT 539
+I ELE+QL +L A+R+ENERD++L+QAVE+LKRLFQGVHGR+T+LCRP +KKYNLAVT
Sbjct: 481 TRIAELEDQLSDLTAERYENERDSRLTQAVESLKRLFQGVHGRMTDLCRPNRKKYNLAVT 540
Query: 540 VAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALG 593
VAMG+FMDAVVVEDE TGK+CIKYLK+QRLPP TFIPLQS+RVK + ERLR LG
Sbjct: 541 VAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLG 594
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/595 (58%), Positives = 429/595 (72%), Gaps = 2/595 (0%)
Query: 1 MPSLLSP-GKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRT 59
MP++ SP GKI +LEMENFKSYKG Q++GPF DFTAIIGPNG+GKSNLMDAISFVLGVRT
Sbjct: 1 MPAIQSPSGKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRT 60
Query: 60 GQLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGN 119
GQLRG+QLKDLIYAFDDR+KEQRGR+AFVRLVYQ+ + E++FTR+ITSAG SEYRID
Sbjct: 61 GQLRGSQLKDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNR 120
Query: 120 LVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQ 179
+VN D YN KL+SLGILVKARNFLVFQGDVESIASKNPKELTGL+E+ISGS+ELK++YE
Sbjct: 121 VVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEG 180
Query: 180 FXXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFN 239
+ALIYQKKKT+ HLRLQE+LK++K+E FLWQL+N
Sbjct: 181 LEEKKASAEEKAALIYQKKKTIGNEKKLKKAQKEEAEKHLRLQEELKALKRERFLWQLYN 240
Query: 240 IENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNK 299
IENDI +R V+ EL F IA REKKI EKS+K
Sbjct: 241 IENDIEKANEDVDSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSK 300
Query: 300 LDK-SQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMAD 358
L K QPELL+ KEE+ RI + H+ +I ++Q+ I++L KM
Sbjct: 301 LGKIQQPELLRFKEEIARIKAKIETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMEL 360
Query: 359 LQEKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEEN 418
+K + YFR+KEEAGMKT KLR+E E+L+RQ+ D EA +N EEN
Sbjct: 361 FNKKRQDSSGKLPMLDSQLQDYFRLKEEAGMKTIKLRDEHEVLERQRRTDLEALRNLEEN 420
Query: 419 LQQLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENL 478
QQL NR+++L+ Q ++ + R +I SS+K K+ +LK ELR +Q+KH ++++ L
Sbjct: 421 YQQLINRKNDLDEQIKRFKDRQGEIETSSSKYKNETTSLKTELRALQEKHVNAREASAKL 480
Query: 479 KLKIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAV 538
K +I ELE+QL +L A+R+ENERD++L+QAVE+LKRLFQGVHGR+T+LCRP +KKYNLAV
Sbjct: 481 KTRIAELEDQLSDLTAERYENERDSRLTQAVESLKRLFQGVHGRMTDLCRPNRKKYNLAV 540
Query: 539 TVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALG 593
TVAMG+FMDAVVVEDE TGK+CIKYLK+QRLPP TFIPLQS+RVK + ERLR LG
Sbjct: 541 TVAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLG 595
>AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structural
maintenance of chromosome 3 | chr5:19701908-19709091
FORWARD LENGTH=1241
Length = 1241
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 10 IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I L M NFKSY G Q +GPF+ F+A++GPNG+GKSN++DA+ FV G R Q+R ++
Sbjct: 26 IKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 85
Query: 69 DLIYAFDDREKEQRGRRAFVRL-----------VYQLANNSEIQFTRTITSAGASEYRID 117
+LI+ + Q A V + +Y+ S+ TR +S+Y I+
Sbjct: 86 ELIH---NSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYIN 142
Query: 118 GNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
N+ KLK G+ + FL+ QG+VE I+ PK
Sbjct: 143 ERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 183
>AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome
3 | chr5:19701908-19709091 FORWARD LENGTH=1244
Length = 1244
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 10 IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I L M NFKSY G Q +GPF+ F+A++GPNG+GKSN++DA+ FV G R Q+R ++
Sbjct: 26 IKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 85
Query: 69 DLIYAFDDREKEQRGRRAFVRL-----------VYQLANNSEIQFTRTITSAGASEYRID 117
+LI+ + Q A V + +Y+ S+ TR +S+Y I+
Sbjct: 86 ELIH---NSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSKYYIN 142
Query: 118 GNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
N+ KLK G+ + FL+ QG+VE I+ PK
Sbjct: 143 ERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 183
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of
chromosomes (SMC) family protein |
chr3:17486765-17493178 FORWARD LENGTH=1171
Length = 1171
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 20/175 (11%)
Query: 10 IHRLEMENFKSYKGFQVIGPFYD--FTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQ 66
I + +E FKSY V+ P +D F AI G NG+GKSN++D+I FVLG+ Q+R A
Sbjct: 3 IKEICLEGFKSYATRTVV-PGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 67 LKDLIYAFDDREKEQRG-RRAFVRLVYQLA----------NNSEIQFTRTITSAGASEYR 115
L++L+Y ++ Q G RA V + + + ++SEI TR I G ++Y
Sbjct: 62 LQELVY-----KQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYL 116
Query: 116 IDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
I+G L + S+ + V +FL+ QG + + + P E+ ++E+ +G+
Sbjct: 117 INGKLAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGT 171
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 24/177 (13%)
Query: 10 IHRLEMENFKSYKGFQVIGPF-YDFTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQL 67
I + +E FKSY V+ F F AI G NG+GKSN++D+I FVLG+ Q+R A L
Sbjct: 3 IKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 68 KDLIY--------------AFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASE 113
++L+Y FD+ E+ + L Y+ + EI TR I G ++
Sbjct: 63 QELVYKQGQAGITKATVSVTFDNSERHRSP------LGYE--EHPEITVTRQIVVGGRNK 114
Query: 114 YRIDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
Y I+G L S+ + V +FL+ QG + + + P E+ ++E+ +G+
Sbjct: 115 YLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGT 171
>AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein |
chr2:11609319-11617064 REVERSE LENGTH=1204
Length = 1204
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 10 IHRLEMENFKSYKGFQVIGPFYD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I ++ +E FKSYK F + ++G NG+GKSN AI FVL LR
Sbjct: 3 IKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRH 62
Query: 69 DLIYAFDDREKEQRGRR---AFVRLVYQLANN------SEIQFTRTITSAGASEYRIDG- 118
L++ E G + AFV +V+ ++N EI+ RT+ +Y +DG
Sbjct: 63 ALLH-------EGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTV-GLKKDDYFLDGK 114
Query: 119 NLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
++ ++ N L+S G ++V QG + S+ E L+++I G+
Sbjct: 115 HITKGEVMNL-LESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGT 165
>AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein |
chr2:11609319-11617064 REVERSE LENGTH=1204
Length = 1204
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 10 IHRLEMENFKSYKGFQVIGPFYD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
I ++ +E FKSYK F + ++G NG+GKSN AI FVL LR
Sbjct: 3 IKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLRSEDRH 62
Query: 69 DLIYAFDDREKEQRGRR---AFVRLVYQLANN------SEIQFTRTITSAGASEYRIDG- 118
L++ E G + AFV +V+ ++N EI+ RT+ +Y +DG
Sbjct: 63 ALLH-------EGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTV-GLKKDDYFLDGK 114
Query: 119 NLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
++ ++ N L+S G ++V QG + S+ E L+++I G+
Sbjct: 115 HITKGEVMNL-LESAGFSRANPYYVVQQGKIASLTLMKDIERLDLLKEIGGT 165