Miyakogusa Predicted Gene

Lj5g3v1048230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1048230.1 Non Chatacterized Hit- tr|B7ZYL0|B7ZYL0_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,52.78,0.000000000000002,
,CUFF.54720.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44160.1 | Symbols:  | Outer membrane OMP85 family protein | ...   204   3e-53
AT5G19620.1 | Symbols: EMB213, OEP80, ATOEP80, TOC75 | outer env...    56   1e-08

>AT3G44160.1 | Symbols:  | Outer membrane OMP85 family protein |
           chr3:15889225-15891814 REVERSE LENGTH=362
          Length = 362

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 125/170 (73%), Gaps = 1/170 (0%)

Query: 1   MGAHKSIHAGKAKLDIGVNFIHNLCSSYVLSPPRLSSSNPFSLAAGSFCFKHPELFSKSD 60
           MGA KSIHAG+AK+D+ V+F H LC+S +  P    +S+P SL  GS C KHP LF  S+
Sbjct: 1   MGAQKSIHAGRAKIDVNVDFTHKLCTSLMF-PAFRDTSSPLSLVIGSLCIKHPNLFGGSE 59

Query: 61  LFDVSWHKGLHDSNLLISYRYPRPLCLGQKCLILQHSASPEIRIHGIPMNNFSHSTSRGV 120
             DVSW KGL+DSN+L+++R PRP    Q+C  +QHS SPEI +HG P++NFS S S GV
Sbjct: 60  KLDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGV 119

Query: 121 RLSKLSIGMDINEPSTSNWSSITGVYFKHFHFRNDGGRSISRDLDGFPVT 170
            LSKL++G+D++EP++S WSS T + F+H    ND GR+I+RDLDGFP+T
Sbjct: 120 NLSKLALGLDLSEPASSKWSSTTSIKFEHVRPINDDGRAITRDLDGFPIT 169


>AT5G19620.1 | Symbols: EMB213, OEP80, ATOEP80, TOC75 | outer
           envelope protein of 80 kDa | chr5:6623323-6627641
           FORWARD LENGTH=732
          Length = 732

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 37  SSNPFSLAAGSFCFKHPELFSKSDLFDVSWHKGLHDSNLLISYRYPRPLCLGQ-----KC 91
           +S P S   GSF + H  LF ++   +VS  +G  DS   I+  Y  P   G      + 
Sbjct: 412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRIN--YTDPWIEGDDKRTSRS 469

Query: 92  LILQHSASPEIRIHGIPMNNFSHSTSRGVRLSKLSIGMDINEPSTSNWSSITGVYFKHFH 151
           +++Q+S +P   +HG   +N S      + + +++ G++ + P    W+   G+ F+H  
Sbjct: 470 IMVQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAG 523

Query: 152 FRNDGGRSISRDLDGFPVTS 171
            R++ G  I +D    P+T+
Sbjct: 524 ARDEQGNPIIKDFYSSPLTA 543