Miyakogusa Predicted Gene
- Lj5g3v1027080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1027080.1 tr|G7IG88|G7IG88_MEDTR Poly(RC)-binding protein
OS=Medicago truncatula GN=MTR_2g038020 PE=4
SV=1,59.72,0.000000000000007,Eukaryotic type KH-domain (KH-domain type
I),NULL; KH DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN
CONT,CUFF.54707.1
(550 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 413 e-115
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 263 3e-70
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 107 2e-23
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 107 2e-23
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 98 2e-20
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 89 1e-17
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 89 1e-17
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 88 1e-17
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 85 2e-16
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 80 3e-15
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 80 4e-15
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 78 1e-14
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 78 2e-14
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 78 2e-14
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 72 7e-13
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 59 7e-09
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lon... 57 5e-08
AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (lon... 56 8e-08
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 55 1e-07
AT4G10070.1 | Symbols: | KH domain-containing protein | chr4:62... 50 4e-06
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 49 6e-06
AT2G25970.1 | Symbols: | KH domain-containing protein | chr2:11... 49 7e-06
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/438 (53%), Positives = 280/438 (63%), Gaps = 70/438 (15%)
Query: 120 ENFGSPEKQVPGEDLK-GSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEET 178
E+ S +K P ED G E K+WPGWPGE VFRMLVPAQKVGSIIGRKG+ IKKI EET
Sbjct: 157 EHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEET 216
Query: 179 KARIKILDGPPGTAERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQ 238
+ARIKILDGPPGT ERAVMVS KEEPE S+PP+++GLLRVH +V+ S + +
Sbjct: 217 RARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSK 276
Query: 239 IITRLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESA 298
+ TRLLV +QAGSLIGKQG T+K+ Q+A+ C +RVLGS+ LPVFAL+DD VVE+ GE
Sbjct: 277 VSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPT 336
Query: 299 GVHKAVELVALHLRKFLVDRSIVGVFETQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 358
VH+A+EL+A HLRKFLVDRSI+ FE QMQ
Sbjct: 337 SVHRALELIASHLRKFLVDRSIIPFFENQMQKPTRQMD---------------------- 374
Query: 359 XXXXXXXXXXQYMPPP-------------------SHN----------YDNYYPPADL-- 387
+MPPP HN +D+YYPP ++
Sbjct: 375 -----------HMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPEMRQ 423
Query: 388 PPMDKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQIPLSYADAVIGASGANI 447
PPM+K HQG AY R+ PM +H SSAPP + +VT MQIPLSYADAVIG SG+NI
Sbjct: 424 PPMEKQPHQG-ISAYGREPPMNVHVSSAPPMVA--QQVTQQMQIPLSYADAVIGTSGSNI 480
Query: 448 SYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAA--SAQQDQMSG 505
SY RR SGA++TIQETRGVPGEMTVE+SGT SQ+Q A QL+QNFMAEA + Q Q
Sbjct: 481 SYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPAPAQPQTVA 540
Query: 506 QINQGYNSYPTNAPVYAS 523
QGYN Y T+ VYA+
Sbjct: 541 PEQQGYNPYATHGSVYAA 558
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 213/362 (58%), Gaps = 14/362 (3%)
Query: 133 DLKGSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTA 192
D S ++WPGWPG+ VFRM+VP KVG+IIGRKG+FIKK+ EET+ARIK+LDGP T
Sbjct: 58 DTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTP 117
Query: 193 ERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNV-DQPADSASGAGRQIIT-RLLVADTQA 250
+R V++S KEEPE + PA++ +LRV + V + D D AG + RLLVA TQA
Sbjct: 118 DRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQA 177
Query: 251 GSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALH 310
+LIGKQGS IKS + +G ++R+L + P +A +D+ +V++QGE+ + KA+E + H
Sbjct: 178 INLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGH 237
Query: 311 LRKFLVDRSIVGVFETQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQY 370
LR+FLVD ++V +FE Q +
Sbjct: 238 LRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLF 297
Query: 371 MPPPSHNYDNYYPPADLPPMDKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQ 430
+ S D+ P+ + ++ P AR +P SSA VT+V+ MQ
Sbjct: 298 LERDSR-VDSRVQPSGV-----SIYSQDPVLSARHSPGLARVSSA-----FVTQVSQTMQ 346
Query: 431 IPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQN 490
IP SYA+ +IG GANI+YIRR SGA+ITI+E+ P ++TVEI GT SQ+Q A+QL+Q
Sbjct: 347 IPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQE 405
Query: 491 FM 492
F+
Sbjct: 406 FI 407
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMV-------SA 200
+ VFR L P +K+GS+IGR G+ +K++ +T+++I+I + PG ER + + +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 201 KEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
+ E+ + PA + L R+H VV D ++ + +Q+ +LLV Q G ++G+ G
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQI 168
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R++ ++P+ AL D +++I GE V KA+ +A L
Sbjct: 169 VQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P + + S+IG+ G I ++ +ET+A IK+ + + +SA+E E +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 208 IPPAVEGLLRVH-KHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
P +E ++R+ K V++ + S TRLLV ++ G ++GK G+ I +
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVS-----FTTRLLVPSSRIGCILGKGGAIITEMRR 397
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+LG ++LP A DD +V+I GE +A+ + LR + DR
Sbjct: 398 MTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMV-------SA 200
+ VFR L P +K+GS+IGR G+ +K++ +T+++I+I + PG ER + + +A
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 201 KEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
+ E+ + PA + L R+H VV D ++ + +Q+ +LLV Q G ++G+ G
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQI 168
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R++ ++P+ AL D +++I GE V KA+ +A L
Sbjct: 169 VQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P + + S+IG+ G I ++ +ET+A IK+ + + +SA+E E +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 208 IPPAVEGLLRVH-KHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
P +E ++R+ K V++ + S TRLLV ++ G ++GK G+ I +
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVS-----FTTRLLVPSSRIGCILGKGGAIITEMRR 397
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+LG ++LP A DD +V+I GE +A+ + LR + DR
Sbjct: 398 MTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E FR+L PA KVGS+IG+ G ++ + E+ A IK+ D + ER +++SA+E ER
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
A +G++RVH +V + +A ++ RLLV G L+GK G I + A
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFEPSAA------VVARLLVHSPYIGRLLGKGGHLISEMRRA 388
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFL 315
TG ++RV D + + D +V++ G V A+ + LR+ +
Sbjct: 389 TGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAM 436
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 45/205 (21%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKIL--------------DGPPGTAERAV 196
FR+L PA + G+IIG+ G I+ + T ++I+++ P G +
Sbjct: 21 FRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDES 80
Query: 197 MVSAKEEPERSIPPAVEG---------------------LLRVHKHVVNVDQPADSASGA 235
V E P P +G LLRV + +V D D+A+
Sbjct: 81 NVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFERIVFGD---DAATVD 137
Query: 236 GRQI-------ITRLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDD 288
G ++ + R++V Q L+ K G I+ ++ +G +R+ +D +P A D
Sbjct: 138 GDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGD 197
Query: 289 SVVEIQGESAGVHKAVELVALHLRK 313
V+++ G+ + V KA+ LV L++
Sbjct: 198 VVIQMNGKFSSVKKALLLVTNCLQE 222
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAV-MVSAKEEPER 206
+ V+R L P +K GSIIG+ GE K+I ETK+ ++I + PG ER V M S EE
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 207 ------SIPPAVEGLLRVHKHVVNVDQPADSAS-----GAGRQIITRLLVADTQAGSLIG 255
+ PA++ L +VH VV D G + + R+LV Q G +IG
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 162
Query: 256 KQGSTIKSYQDATGCNLRVLGSDHLPVFA--LRDDSVVEIQGESAGVHKAVELVA 308
K G I++ ++ T +RV+ DHLP A L D ++ I GE V +A+ VA
Sbjct: 163 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 216
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 153 MLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPAV 212
+ PA+ VG +IG+ G FI +I +ET A I++ + + +S+KE E PAV
Sbjct: 273 FICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAV 331
Query: 213 EGLLRVHKHVV-NVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGCN 271
+R+ + V + A+ + I TRLLV+ +Q G LIGK G+ I + T N
Sbjct: 332 NAAIRLQQRCSEKVGKDANDLA-----ISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 386
Query: 272 LRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
+R+L + +P A D+ +V+I G KA+ V L LR
Sbjct: 387 IRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLR 427
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAV-MVSAKEEPER 206
+ V+R L P +K GSIIG+ GE K+I ETK+ ++I + PG ER V M S EE
Sbjct: 18 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77
Query: 207 ------SIPPAVEGLLRVHKHVVNVDQPADSAS-----GAGRQIITRLLVADTQAGSLIG 255
+ PA++ L +VH VV D G + + R+LV Q G +IG
Sbjct: 78 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 137
Query: 256 KQGSTIKSYQDATGCNLRVLGSDHLPVFA--LRDDSVVEIQGESAGVHKAVELVA 308
K G I++ ++ T +RV+ DHLP A L D ++ I GE V +A+ VA
Sbjct: 138 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 191
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E + PA+ VG +IG+ G FI +I +ET A I++ + + +S+KE E
Sbjct: 243 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 302
Query: 208 IPPAVEGLLRVHKHVV-NVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
PAV +R+ + V + A+ + I TRLLV+ +Q G LIGK G+ I +
Sbjct: 303 -SPAVNAAIRLQQRCSEKVGKDANDLA-----ISTRLLVSSSQIGCLIGKGGAVISEMRS 356
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
T N+R+L + +P A D+ +V+I G KA+ V L LR
Sbjct: 357 VTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLR 402
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAV-MVSAKEEPER 206
+ V+R L P +K GSIIG+ GE K+I ETK+ ++I + PG ER V M S EE
Sbjct: 10 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 69
Query: 207 ------SIPPAVEGLLRVHKHVVNVDQPADSAS-----GAGRQIITRLLVADTQAGSLIG 255
+ PA++ L +VH VV D G + + R+LV Q G +IG
Sbjct: 70 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 256 KQGSTIKSYQDATGCNLRVLGSDHLPVFA--LRDDSVVEIQGESAGVHKAVELVA 308
K G I++ ++ T +RV+ DHLP A L D ++ I GE V +A+ VA
Sbjct: 130 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 183
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E + PA+ VG +IG+ G FI +I +ET A I++ + + +S+KE E
Sbjct: 235 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 294
Query: 208 IPPAVEGLLRVHKHVV-NVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
PAV +R+ + V + A+ + I TRLLV+ +Q G LIGK G+ I +
Sbjct: 295 -SPAVNAAIRLQQRCSEKVGKDANDLA-----ISTRLLVSSSQIGCLIGKGGAVISEMRS 348
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
T N+R+L + +P A D+ +V+I G KA+ V L LR
Sbjct: 349 VTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLR 394
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 19/183 (10%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK-------- 201
V+R+L P+ +GS+IG+ G+ I I +ET+ARIK++D PG +ER + +
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 202 ----EEPERSIP--PAVEGLLRVHKHVVNVDQPADSASGAGRQII--TRLLVADTQAGSL 253
E + S+P A LL+VH +V A + R RLLV +Q +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 254 IGKQGSTIKSYQDATGCNLRVLG---SDHLPVFALRDDSVVEIQGESAGVHKAVELVALH 310
IGK GS IK+ + T N++V+ SD A+ D++V I GE+ V KA+ V+
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAI 224
Query: 311 LRK 313
+ K
Sbjct: 225 MYK 227
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVM-VSAKEEPERSIP 209
+++ + K+G +IG+ G IK I + + + I++ D + V+ V+A E P+
Sbjct: 319 IKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKS 378
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATG 269
AVE +L + + + + D+ ++ +LLV+ G +IGK GS I + T
Sbjct: 379 MAVEAVLLLQEKINDEDED---------KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTK 429
Query: 270 CNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR-KFLVDR 318
++ + ++ P A +D +VEI GE + V A+ + L LR L DR
Sbjct: 430 ADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDR 479
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMV--SAKEEPERS 207
V+R+L P VG +IG+ G+ I I TKA+IK+ D G ++R + + S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 208 ---------IPPAVEGLLRVHKHVVNVDQPADSASGAGR--QIITRLLVADTQAGSLIGK 256
+ A + LL+V+ +V D+ ++ + R RLLV +Q+ SLIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 257 QGSTIKSYQDATGCNLRVLG---SDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
G IK + T +++V+ SD V A+ D+VV I GE V +A+ V+ + K
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 216
Query: 314 F 314
Sbjct: 217 I 217
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDG--PPGTAERAVMVSAKEEPE 205
E VF++L P + +IG+ G IK+I E + + I++ D G E ++V+A E P+
Sbjct: 311 ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPD 370
Query: 206 RSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
AVE +L + +++ + D + +LLV+ G +IGK GS I +
Sbjct: 371 DMKSMAVEAVLLLQEYINDED---------AENVKMQLLVSSKVIGCVIGKSGSVINEIR 421
Query: 266 DATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
T N+ + + D +VE+ GE + V A+ + L LR+
Sbjct: 422 KRTNANICISKG--------KKDDLVEVSGEVSSVRDALIQIVLRLRE 461
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 16/181 (8%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMV--SAKEEPERS 207
V+R+L P VG +IG+ G+ I I TKA+IK+ D G ++R + + S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 208 ---------IPPAVEGLLRVHKHVVNVDQPADSASGAGR--QIITRLLVADTQAGSLIGK 256
+ A + LL+V+ +V D+ ++ + R RLLV +Q+ SLIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 257 QGSTIKSYQDATGCNLRVLG---SDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
G IK + T +++V+ SD V A+ D+VV I GE V +A+ V+ + K
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 216
Query: 314 F 314
Sbjct: 217 I 217
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 19/168 (11%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDG--PPGTAERAVMVSAKEEPE 205
E VF++L P + +IG+ G IK+I E + + I++ D G E ++V+A E P+
Sbjct: 311 ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPD 370
Query: 206 RSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
AVE +L + +++ + D + +LLV+ G +IGK GS I +
Sbjct: 371 DMKSMAVEAVLLLQEYINDED---------AENVKMQLLVSSKVIGCVIGKSGSVINEIR 421
Query: 266 DATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
T N+ + + D +VE+ GE + V A+ + L LR+
Sbjct: 422 KRTNANICISKG--------KKDDLVEVSGEVSSVRDALIQIVLRLRE 461
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 147 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPER 206
G FR+L P VG++IG+ G IK++ + T A+I++ + P G+ +R + + A+ + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 207 SIPPAVEGLLRVHKHVVNVDQPADSASGA-------------GRQIITRLLVADTQAGSL 253
+ + A GA ++ RLL + AG++
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAV 164
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
IGK G + S + TGC + + ++LP+ A DD +VE++G + V KA+ ++ L
Sbjct: 165 IGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKALVSISRCL 221
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
VF++L + G +IG G+ ++ + ET A I + + ER + V+A E PE
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATG 269
PA + ++ + + + +G I RL+V +Q G ++GK G + + TG
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTG 572
Query: 270 CNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSI 320
+++L + P +D VV+I GE V +A+ + LR + S+
Sbjct: 573 AAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 147 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPER 206
G FR+L P VG++IG+ G IK++ + T A+I++ + P G+ +R + + A+ + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 207 SIPPAVEGLLRVHKHVVNVDQPADSASGA-------------GRQIITRLLVADTQAGSL 253
+ + A GA ++ RLL + AG++
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAV 164
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
IGK G + S + TGC + + ++LP+ A DD +VE++G + V KA+ ++ L
Sbjct: 165 IGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKALVSISRCL 221
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
VF++L + G +IG G+ ++ + ET A I + + ER + V+A E PE
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATG 269
PA + ++ + + + +G I RL+V +Q G ++GK G + + TG
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTG 572
Query: 270 CNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSI 320
+++L + P +D VV+I GE V +A+ + LR + S+
Sbjct: 573 AAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 14/178 (7%)
Query: 147 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPER 206
G FR+L P VG++IG+ G IK++ + T A+I++ + P G+ +R + + A+ + +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 207 SIPPAVEGLLRVHKHVVNVDQPADSASGA-------------GRQIITRLLVADTQAGSL 253
+ + A GA ++ RLL + AG++
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAV 164
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
IGK G + S + TGC + + ++LP+ A DD +VE++G + V KA+ ++ L
Sbjct: 165 IGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKALVSISRCL 221
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
VF++L + G +IG G+ ++ + ET A I + + ER + V+A E PE
Sbjct: 453 VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSS 512
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATG 269
PA + ++ + + + +G I RL+V +Q G ++GK G + + TG
Sbjct: 513 PAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTG 572
Query: 270 CNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSI 320
+++L + P +D VV+I GE V +A+ + LR + S+
Sbjct: 573 AAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 145 WPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEP 204
+ E VF++L PA K+ ++G I + E +++ D G+ E+ + +S++E P
Sbjct: 321 YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAP 380
Query: 205 ERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSY 264
+ PA E LL + ++++ D+ I TRLLV + L GK GS +
Sbjct: 381 DDPFFPAQEALLHIQTQIIDLIPDKDNL------ITTRLLVPSRDSICLEGKAGS-VSEI 433
Query: 265 QDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFL 315
TG ++++L + +P A +D V++I GE +A+ + L LR +
Sbjct: 434 SRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHM 484
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 140 KKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS 199
K P +R+L K G +IG+ G IK I + T A I + + PG AER + +S
Sbjct: 59 KSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Query: 200 --AKEEPERSIP---PAVEGLLRVHKHVVNV-------------DQPADSASGAGRQIIT 241
+ +P+ +P PA E L VH ++ ++ G +++T
Sbjct: 119 DNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178
Query: 242 RLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSD-HLPVFALRDDSVVEIQGESAGV 300
RL+V+ G L+GK G I+ + T ++R+L + +LP + +V+I GE V
Sbjct: 179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAV 238
Query: 301 HKAVELVALHLRK 313
A+ +V+ LR+
Sbjct: 239 KNALAIVSSRLRE 251
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 5/175 (2%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
VF+++ + G IIG++G I+ + ET A I + + ER V VSA+E E
Sbjct: 278 VFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYS 337
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGA--GRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
A L V V +D G G + T+LLV A S G+ + A
Sbjct: 338 HAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSF---NGNGNREAIIA 394
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVG 322
TG ++ + + + + ++ V+EI+GE + V KA+ V+ LR+ L+ + ++G
Sbjct: 395 TGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLG 449
>AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=334
Length = 334
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGP---PGTAERAVMVSAKEEPERS 207
R LV GS+IG+ G I + ++ ARI++ PGT +R +M+S S
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG------S 90
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
I V GL + + + D R+ I RL+V ++ G +IGK G+TIKS+ +
Sbjct: 91 IKEVVNGLELILDKLHSELHAEDGNEVEPRRRI-RLVVPNSSCGGIIGKGGATIKSFIEE 149
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+ +++ D+ F D +V + G +A++L+ L
Sbjct: 150 SKAGIKISPLDN--TFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
>AT5G04430.1 | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long
form) | chr5:1250602-1253523 REVERSE LENGTH=313
Length = 313
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGP---PGTAERAVMVSAKEEPERS 207
R LV GS+IG+ G I + ++ ARI++ PGT +R +M+S S
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG------S 90
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
I V GL + + + D R+ I RL+V ++ G +IGK G+TIKS+ +
Sbjct: 91 IKEVVNGLELILDKLHSELHAEDGNEVEPRRRI-RLVVPNSSCGGIIGKGGATIKSFIEE 149
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+ +++ D+ F D +V + G +A++L+ L
Sbjct: 150 SKAGIKISPLDN--TFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%)
Query: 171 IKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNVDQPAD 230
+ K T A I + D P ER V ++A E+ + + L+ V ++
Sbjct: 326 VIKTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKV 385
Query: 231 SASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSV 290
SG I RL+V Q L+G++G + Q TG + VL + P ++ V
Sbjct: 386 LDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQV 445
Query: 291 VEIQGESAGVHKAVELVALHLRKFLVDRSI 320
V+I GE V +A+ V LR+ L+++S
Sbjct: 446 VQISGEFPNVREAINQVTSMLREDLINQSF 475
>AT4G10070.1 | Symbols: | KH domain-containing protein |
chr4:6295608-6299759 REVERSE LENGTH=725
Length = 725
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 26/237 (10%)
Query: 100 QHDGVITEEQEQHDGGGVTEENFGSPEKQVPGE----DLKGSEIKKWPGWPGENVFRMLV 155
+H VI ++ ++ + G ++EN K+V GE ++ G++ R+ V
Sbjct: 133 EHQKVIDDDSKEVNDGS-SQENGKEENKEVDGEKSQKEVDGTQ---------STTRRIDV 182
Query: 156 PAQKVGSIIGRKGEFIKKITEETKARIKIL---DGPPGTAERAV----MVSAKEEPERSI 208
P+ KVG +IG+ GE I+ + + A+I+IL + P +A R V V+ E E+ I
Sbjct: 183 PSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESAEKLI 242
Query: 209 PPAV-EGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
+ E +V P+ A G QI + V + + G +IG+ G TIK+ Q
Sbjct: 243 SAVIAEAEAGGSPALVARGHPSTHAIGIPEQI--EIKVPNDKVGLIIGRGGETIKNMQTR 300
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVGVF 324
+G +++ H L+ + V I G+ + A +++ + + S G +
Sbjct: 301 SGARTQLI-PQHAEGDGLK-ERTVRISGDKMQIDIATDMIKDVMNQNARPSSYSGGY 355
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 182 IKILDGPPGTAERAVMVSAKEEPERSIP--------PAVEGLLRVHK------HVVNVDQ 227
+++ + PG ER V + + E I PA + L +VH + D
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 228 PADSASGAGRQIIT-RLLVADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPV--FA 284
+ G+ ++T R+LV Q G LIGK G I++ ++ T +RV +D+LP+ A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVR-NDNLPMCALA 119
Query: 285 LRDDSVVEIQGESAGVHKAVELVALHL 311
L D +++I G+ + V +A+ VA L
Sbjct: 120 LSHDELLQIIGDPSAVREALYQVAFLL 146
>AT2G25970.1 | Symbols: | KH domain-containing protein |
chr2:11071844-11075604 REVERSE LENGTH=632
Length = 632
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKI---LDGPPGTAERAVMVSAKEEPERSI 208
++ +P +VG IIG+ GE IK + ++ A+I++ +D P A R V ++ P++
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGT--PDQ-- 192
Query: 209 PPAVEGLLRVHKHVVNVDQPADSASGAGRQIITR-------------LLVADTQAGSLIG 255
+ + + + +V Q A++ + AG + + + + G +IG
Sbjct: 193 ------ISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIG 246
Query: 256 KQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELV 307
K G TIKS Q TG ++V+ HLP + ++I G + + A +LV
Sbjct: 247 KGGETIKSMQAKTGARIQVI-PLHLPPGDPTPERTLQIDGITEQIEHAKQLV 297