Miyakogusa Predicted Gene

Lj5g3v1015780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1015780.1 tr|D7LYD9|D7LYD9_ARALL Prenylated rab receptor 2
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_9,40.27,4e-19,PRA1,Prenylated rab acceptor PRA1;
seg,NULL; PRENYLATED RAB ACCEPTOR 1-RELATED,NULL,CUFF.54673.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acce...    64   7e-11
AT1G08770.1 | Symbols: PRA1.E | prenylated RAB acceptor 1.E | ch...    63   1e-10
AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acce...    63   1e-10
AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4 | ...    60   1e-09
AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1 | ...    56   1e-08
AT1G04260.1 | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement prote...    52   3e-07
AT2G38360.1 | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 | ...    47   6e-06
AT5G01640.1 | Symbols: PRA1.B5 | prenylated RAB acceptor 1.B5 | ...    47   6e-06
AT3G56110.2 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 | ...    47   1e-05
AT3G56110.1 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 | ...    47   1e-05

>AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab
          acceptor) family protein | chr1:20588450-20589019
          FORWARD LENGTH=189
          Length = 189

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 28 SNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
          S   TRRPW+  F   S+T P+   +A  R+K NL +F  NY + +LFILF+SL++HP S
Sbjct: 31 SGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTS 90

Query: 88 II 89
          +I
Sbjct: 91 LI 92


>AT1G08770.1 | Symbols: PRA1.E | prenylated RAB acceptor 1.E |
           chr1:2808933-2809562 FORWARD LENGTH=209
          Length = 209

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query: 23  RATNASNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLI 82
           + T  S   T RPW E   L +L+ P    EA   +KHN+ +F GNY + +L I+F+ LI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 83  WHPVSII 89
           +HP+S+I
Sbjct: 97  YHPMSMI 103


>AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab
          acceptor) family protein | chr3:4495202-4495768 REVERSE
          LENGTH=188
          Length = 188

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 28 SNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
          +   TRR W   F  HS+  P+ + +A  R+K NL +F  NY +V+L ++F SLIWHP S
Sbjct: 31 AGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTS 90

Query: 88 II 89
          +I
Sbjct: 91 LI 92


>AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4 |
          chr3:4492992-4493558 REVERSE LENGTH=188
          Length = 188

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 29 NFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSI 88
             TRR W   F LHS   P+ + +   R+K NL +F  NY +V+L ++F SLIWHP S+
Sbjct: 32 GLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSL 91

Query: 89 I 89
          I
Sbjct: 92 I 92


>AT1G17700.1 | Symbols: PRA1.F1 | prenylated RAB acceptor 1.F1 |
          chr1:6089588-6090130 FORWARD LENGTH=180
          Length = 180

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query: 28 SNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
          S   TRRPW++   L S   P  L     R++ N  +F  NYT+V+LF +F+SLIW+P S
Sbjct: 31 SGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFS 90


>AT1G04260.1 | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement
          protein interacting protein 7 | chr1:1140749-1141297
          REVERSE LENGTH=182
          Length = 182

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 23 RATNASNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLI 82
          + T  S     RPW +F  L + + P S+ +A+ RV  NL HF  NY+++L  +L ++LI
Sbjct: 10 KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 83 WHPVSII 89
            P++I+
Sbjct: 70 TRPIAIL 76


>AT2G38360.1 | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 |
           chr2:16069840-16070502 REVERSE LENGTH=220
          Length = 220

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 33  RRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
           RRPW E     +L++P S+ +A++R++ N  +F  NY  V   I+  SL+ HP S++
Sbjct: 54  RRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLV 110


>AT5G01640.1 | Symbols: PRA1.B5 | prenylated RAB acceptor 1.B5 |
           chr5:241442-242113 REVERSE LENGTH=223
          Length = 223

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%)

Query: 34  RPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
           RPW E     + T+P SL EA  R + N  +F  NY  ++  IL  SL+ HP S+I
Sbjct: 55  RPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLI 110


>AT3G56110.2 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 |
          chr3:20822228-20822857 REVERSE LENGTH=209
          Length = 209

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 33 RRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHP 85
          RRPW E     S+ RP SL +A  R++ NL +F  NY  ++  +L  SL  HP
Sbjct: 44 RRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHP 96


>AT3G56110.1 | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 |
          chr3:20822228-20822857 REVERSE LENGTH=209
          Length = 209

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 33 RRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHP 85
          RRPW E     S+ RP SL +A  R++ NL +F  NY  ++  +L  SL  HP
Sbjct: 44 RRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHP 96