Miyakogusa Predicted Gene
- Lj5g3v1015150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1015150.1 Non Chatacterized Hit- tr|I1GQB1|I1GQB1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,31.34,2e-18,no
description,Nucleic acid-binding, OB-fold; SSB,Primosome
PriB/single-strand DNA-binding; SINGLE-S,gene.g60977.t1.1
(375 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-b... 115 4e-26
AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally a... 106 3e-23
AT4G20010.2 | Symbols: PTAC9, OSB2 | plastid transcriptionally a... 105 4e-23
AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA bin... 92 7e-19
AT5G44785.1 | Symbols: OSB3 | organellar single-stranded DNA bin... 88 8e-18
AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA bin... 88 8e-18
>AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand
DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261
Length = 261
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 145 YPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKK--NATQTSWVNLT 202
+ KP + L NSVSL+G V +++ + + +T L VK N ++ ++L
Sbjct: 42 FKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLR 101
Query: 203 FWDELAHVAFQHVQKGHQIHVSGRLVADTVETDE--GKQQTYYKVVAQELNFIDRSFSQV 260
WD +A H++ I VSGRL + + + + Y+V E+N++ S V
Sbjct: 102 MWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHV 161
Query: 261 NSQDQDSDFMMSGNGKSYMFSRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKA 320
D +S N K+ + S + LWQ FF+NP +WWDNR K+NPK
Sbjct: 162 ------LDSQISKNPKT----KTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQ 211
Query: 321 PDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSR 353
PDFKHKDTGEALW+ P W+ +LE+ D +
Sbjct: 212 PDFKHKDTGEALWL-CSDLPDWITRRLELFDQK 243
>AT4G20010.1 | Symbols: PTAC9, OSB2 | plastid transcriptionally
active 9 | chr4:10842128-10843989 FORWARD LENGTH=371
Length = 371
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 25/252 (9%)
Query: 109 KTPISKPKFQFPCSPSHSNLKLKLKFKCSSMSTNASYPKPSEIPWQKELCNSVSLIGTVG 168
K P P+ P P L+ + +T P+P+EI ++ E+ N V+LIG V
Sbjct: 57 KAPAKTPEAVTPVKP--------LEIASVTATTENELPRPNEIAYESEVANWVNLIGFVD 108
Query: 169 APVEIKHFPSGKVASWTRLAVKKNATQTS--WVNLTFWDELAHVAFQHVQKGHQIHVSGR 226
PV+ + GK + T ++ +++A+ +S W+ + F +LA A ++V K QIHVSG+
Sbjct: 109 QPVQFEASSDGKFWAGTVIS-QRSASDSSGFWIPIIFEGDLAKTAARYVSKDDQIHVSGK 167
Query: 227 LVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQDSDFMMSGNGKSYMFSRKAGY 286
L D+ + Q +V+ Q LNFI Q S +MS + K +K
Sbjct: 168 LFIDSPPPNMTYAQANVQVLVQNLNFI-----QPMSPSPSPFMVMSSSEKEESGIKKQPA 222
Query: 287 AANSTGSVMEL---WQAFFANPGEWWDNRNKKRN----PKAPDFKHKDTGEALWIEGRST 339
A + E W NP EWWD+R K N P+ PDFK KD+ +LW+
Sbjct: 223 RAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWL--NKA 280
Query: 340 PSWVNSQLEIMD 351
P+WV +LE ++
Sbjct: 281 PNWVLPKLEGLE 292
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E W+ NP +WWDNR KRN KAPDFKHK+TGEALW+ +P+WV +L
Sbjct: 310 ESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKL 359
>AT4G20010.2 | Symbols: PTAC9, OSB2 | plastid transcriptionally
active 9 | chr4:10842128-10843989 FORWARD LENGTH=371
Length = 371
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 25/252 (9%)
Query: 109 KTPISKPKFQFPCSPSHSNLKLKLKFKCSSMSTNASYPKPSEIPWQKELCNSVSLIGTVG 168
K P P+ P P L+ + +T P+P+EI ++ E+ N V+LIG V
Sbjct: 57 KAPAKTPEAVTPVKP--------LEIASVTATTENELPRPNEIAYESEVANWVNLIGFVD 108
Query: 169 APVEIKHFPSGKVASWTRLAVKKNATQTS--WVNLTFWDELAHVAFQHVQKGHQIHVSGR 226
PV+ + GK + T ++ +++A+ +S W+ + F +LA A ++V K QIHVSG+
Sbjct: 109 QPVQFEASSDGKFWAGTVIS-QRSASDSSGFWIPIIFEGDLAKTAARYVSKDDQIHVSGK 167
Query: 227 LVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQDSDFMMSGNGKSYMFSRKAGY 286
L D+ + Q +V+ Q LNFI Q S +MS + K +K
Sbjct: 168 LFIDSPPPNMTYAQANVQVLVQNLNFI-----QPMSPSPSPFMVMSSSEKEESGIKKQPG 222
Query: 287 AANSTGSVMEL---WQAFFANPGEWWDNRNKKRN----PKAPDFKHKDTGEALWIEGRST 339
A + E W NP EWWD+R K N P+ PDFK KD+ +LW+
Sbjct: 223 IAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWL--NKA 280
Query: 340 PSWVNSQLEIMD 351
P+WV +LE ++
Sbjct: 281 PNWVLPKLEGLE 292
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E W+ NP +WWDNR KRN KAPDFKHK+TGEALW+ +P+WV +L
Sbjct: 310 ESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKL 359
>AT1G31010.1 | Symbols: OSB4 | organellar single-stranded DNA
binding protein 4 | chr1:11054926-11056873 REVERSE
LENGTH=360
Length = 360
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 128/299 (42%), Gaps = 86/299 (28%)
Query: 145 YPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLA--------VKKNATQT 196
+P+P E+P+Q ++ NS+ LIG V PV+ GK + T ++ + +++
Sbjct: 59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSN 118
Query: 197 SWVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTY------------YK 244
W+ + F +LAH A +++K ++H++G+++ D +++ Q + ++
Sbjct: 119 FWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQ 178
Query: 245 VVAQELNFIDRS----------------------------------FSQVNSQDQDSDFM 270
V+ ++L++I+ S F V+ ++ D+
Sbjct: 179 VMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTNLWFDLVDKPNEWCDYR 238
Query: 271 -MSGNG----KSYMFSRKAGYAA----NSTGSVM---------------------ELWQA 300
M NG K F +K G A N+ ++ E W+
Sbjct: 239 EMKQNGSVNPKHPDFKKKDGSQALWLNNAPTEILSELKDVKFDIPKYAKQPKAGEESWKD 298
Query: 301 FFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMGSFTG 359
N +WWDNR KR PK+PDFKHK+TG LW+ +PSWV +L S+ G
Sbjct: 299 LVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLS--DSPSWVLEKLPPPKSKTSDIYG 355
>AT5G44785.1 | Symbols: OSB3 | organellar single-stranded DNA
binding protein 3 | chr5:18070877-18073010 REVERSE
LENGTH=440
Length = 440
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 148 PSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-WVNLTFWDE 206
P +I ++ E+ N ++LIG V PV+ GK + T ++ + + ++ W+ + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 207 LAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQD 266
LA +A QHV+K +IHVSG+L D+ + Q+ +V+ Q LNF+ + S +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 267 SDFMMSGNGKSYMFSRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRN----PKAPD 322
+ S K S+K T + W+ NP EW D+R K N P PD
Sbjct: 191 EKEVTSIKKKPAR-SKKVKVIDEETSNS---WKHLIENPKEWLDHRGNKANGLVKPGHPD 246
Query: 323 FKHKDTGEALWIEGRSTPSWVNSQLE 348
FK K G +LW+ + P W +LE
Sbjct: 247 FKMKVGGLSLWLS--TAPDWALLKLE 270
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 378 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 427
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 292 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 341
>AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA
binding protein 3 | chr5:18070877-18073010 REVERSE
LENGTH=442
Length = 442
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 148 PSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS-WVNLTFWDE 206
P +I ++ E+ N ++LIG V PV+ GK + T ++ + + ++ W+ + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 207 LAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNSQDQD 266
LA +A QHV+K +IHVSG+L D+ + Q+ +V+ Q LNF+ + S +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 267 SDFMMSGNGKSYMFSRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRN----PKAPD 322
+ S K S+K T + W+ NP EW D+R K N P PD
Sbjct: 191 EKEVTSIKKKPAR-SKKVKVIDEETSNS---WKHLIENPKEWLDHRGNKANGLVKPGHPD 246
Query: 323 FKHKDTGEALWIEGRSTPSWVNSQLE 348
FK K G +LW+ + P W +LE
Sbjct: 247 FKMKVGGLSLWLS--TAPDWALLKLE 270
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 380 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 429
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 347
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 294 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 343