Miyakogusa Predicted Gene

Lj5g3v1014650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1014650.1 Non Chatacterized Hit- tr|I1N9K6|I1N9K6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53547
PE,56.41,5e-17,seg,NULL,CUFF.54621.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain...    52   4e-07

>AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain 12
           | chr4:1176190-1178489 REVERSE LENGTH=402
          Length = 402

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 80/180 (44%), Gaps = 31/180 (17%)

Query: 60  NIKPDAQNFHL---SSSSPTFLHHPKTIIASPPFRDLHVPATSPYLSATALLQKAA---- 112
           N  P+ Q  H     SSS  F   P  I  S     L  P T+  LSATALLQKA     
Sbjct: 227 NPNPNFQGHHFMFNKSSSLLFTSSPLFIEPSLSTAALSTPPTAA-LSATALLQKATSLSS 285

Query: 113 -TFGAAAIT---GQHAPPHQLSMSEFGSV---------TTQLDSVVPDHFINVRGIKNGD 159
            TFG    T   G H   H  +++EF  V         +++ D +V D F +        
Sbjct: 286 TTFGGGGQTRSIGHHR--HLTNVNEFLGVDRVMMTSASSSEYDQLVVDGFTSTW---QKA 340

Query: 160 DRHTRDFLGLTGDGNGGAVDVSVGVKDMLTFT-GVDYQQPHYNEHNHNSLFKSQQQGFGL 218
           DR TRDFLGLT  G+GG V V  G  DML +  GV +    Y+  +H+  F+      G 
Sbjct: 341 DRLTRDFLGLT--GHGGHVSVRPG--DMLEYAGGVAFPMSAYDTESHDHSFQKAYDHLGF 396