Miyakogusa Predicted Gene

Lj5g3v1014550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1014550.1 Non Chatacterized Hit- tr|B6T4D5|B6T4D5_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4
SV=1,58.02,5e-19,Ribosomal_S21,Ribosomal protein S21,CUFF.54611.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26360.1 | Symbols:  | Ribosomal protein S21 family protein |...   122   5e-29

>AT3G26360.1 | Symbols:  | Ribosomal protein S21 family protein |
           chr3:9655963-9656373 REVERSE LENGTH=101
          Length = 101

 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 86/113 (76%), Gaps = 13/113 (11%)

Query: 1   MNSIAKRLSSLFGKSACATEP-LNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMT 59
           MN+IAKR++ L       T P LN      QQLQQ RGIRV+VF+ +L+ AL ++Q+KM 
Sbjct: 1   MNTIAKRVTGL------VTRPSLN------QQLQQERGIRVKVFSNDLDKALTILQKKMQ 48

Query: 60  SSGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVRGL 112
           SSG+ER+IK  Q  HIKNSEK+VLARKNLERR++S D ARKL++I+IKKVRGL
Sbjct: 49  SSGMERLIKGTQTHHIKNSEKKVLARKNLERRIKSIDFARKLQSILIKKVRGL 101