Miyakogusa Predicted Gene

Lj5g3v1003310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1003310.1 Non Chatacterized Hit- tr|I0YU46|I0YU46_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,44.12,5e-18,seg,NULL,CUFF.54508.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04614.1 | Symbols:  | unknown protein; Has 35333 Blast hits ...   110   3e-25

>AT4G04614.1 | Symbols:  | unknown protein; Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr4:2327308-2327914 REVERSE LENGTH=176
          Length = 176

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 92/133 (69%), Gaps = 8/133 (6%)

Query: 34  PQGKSQKEKGAVIDFDALKRYGYKGGPSVLKVPAPKEXXXXXXXXXXTGKEK-RVDNKGI 92
           P  +  K+     D+++L+++GYK    +  +PAP E          TGK+K RV+   +
Sbjct: 50  PIARFAKKDKKAFDYESLQQHGYKA-VGLSDIPAPMEKQDWSWT---TGKDKQRVEE--V 103

Query: 93  EESYEERQKTREA-LSQGEQLQTVLTRSEKKNLSFSQKEKRKRELGQASRGKNYVEEEKR 151
           +ESY+ER+ TR A ++ GE +     R+++KNLSFSQKEK+KR+LGQASRGKNYVEEEKR
Sbjct: 104 KESYQEREATRAAAVTGGETIANAQLRNDRKNLSFSQKEKKKRDLGQASRGKNYVEEEKR 163

Query: 152 LLRDSGVYSGFDA 164
            LR+SGVYSGFD+
Sbjct: 164 QLRESGVYSGFDS 176