Miyakogusa Predicted Gene

Lj5g3v0988590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0988590.1 Non Chatacterized Hit- tr|I1L457|I1L457_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,40.28,0.0000005,
,CUFF.54472.1
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    51   2e-07
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    45   8e-06

>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 1   MAKKGLFPDIHNFTTLIKGIFLDNELQKAQSVWNLLRAVGLIHDVQLYICLIRELCQSHM 60
           M K G  PDI  FT+LI G  L N +++A S+ N +  +G+  DV +Y  +I  LC++  
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH 192

Query: 61  VDDALTLL 68
           V+ AL+L 
Sbjct: 193 VNYALSLF 200


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 1   MAKKGLFPDIHNFTTLIKGIFLDNELQKAQSVWNLLRAVGLIHDVQLYICLIRELCQSHM 60
           M ++G+ PD   +T+LI G   +N+L KA  + +L+ + G   +++ +  LI   C++++
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 61  VDDALTLL 68
           +DD L L 
Sbjct: 403 IDDGLELF 410