Miyakogusa Predicted Gene

Lj5g3v0977300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0977300.1 Non Chatacterized Hit- tr|A5BG99|A5BG99_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,58.62,2e-18,F-box-like,NULL; no description,NULL; F-BOX/LRR
PROTEIN-RELATED, ARATH,NULL; F-BOX/LEUCINE RICH REP,CUFF.54468.1
         (530 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein | c...   259   5e-69
AT4G02760.2 | Symbols:  | RNI-like superfamily protein | chr4:12...   248   7e-66
AT4G02760.1 | Symbols:  | RNI-like superfamily protein | chr4:12...   248   7e-66
AT4G02760.3 | Symbols:  | RNI-like superfamily protein | chr4:12...   244   9e-65
AT4G02733.1 | Symbols:  | F-box family protein | chr4:1210173-12...   158   7e-39

>AT4G02740.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr4:1217756-1220834 REVERSE LENGTH=479
          Length = 479

 Score =  259 bits (661), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 219/392 (55%), Gaps = 35/392 (8%)

Query: 72  QTELIDRALKIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASAT 131
           Q  L+DR L++ S+LLD+ ++  RKRAS HNS +W LPP+LTIKVFS LDT+S+  A+  
Sbjct: 62  QDRLVDRTLELASLLLDSTRRCFRKRASVHNSNSWSLPPELTIKVFSMLDTKSMMQAAVC 121

Query: 132 CTLFNKCAKDPLCYENLDLTTLVPKVNNSVVSTMIQRAGKALRSLKLGVIPGATPSPGCC 191
           CT+FNKCA D LCY ++DLTT     +  VVSTMI RAGK LRSLKLG +          
Sbjct: 122 CTMFNKCAMDRLCYSHIDLTTSARYADKGVVSTMINRAGKELRSLKLGRV---------- 171

Query: 192 QPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVXXXXXXXXXXXXXXY 251
                 +R A  D +              + +L+ SCLSPL+ +               Y
Sbjct: 172 ------VRTAGSDSA--------------APLLSGSCLSPLAYN--HGFLGSRLRSLRLY 209

Query: 252 NIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHYHLIERLFFESSKTGRD- 310
           N+  +   SL  ALS CP++ DL IVGL+        S++    LIE LF E+    R  
Sbjct: 210 NLRPIKYRSLCDALSVCPNITDLRIVGLYNLTEELFNSLTKKCRLIEHLFLETYGYPRTL 269

Query: 311 DSLKTQTCVELVDNCPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVNFSTSYSITGSFLR 370
           +S    + VE V NCP+LTSL+L  F L D   R L +  RKLKY+N S S +I G FLR
Sbjct: 270 ESKAGSSLVEFVTNCPNLTSLTLIRFGLTDDWARNLAESCRKLKYLNLSRSPTIKGRFLR 329

Query: 371 NLGSYNGGNSLEALILRDCMHLKEVEVARLLTAILAGDFKSLLHLDISNREGLASEGDWY 430
            LG     N L+ LILR C  L+E EV     ++L G+FKS+  +D+S+  GLAS  D  
Sbjct: 330 ELGLSCKENLLKTLILRSCPKLQEKEVLEFCNSLLTGNFKSIRQIDVSSNSGLAS-SDRG 388

Query: 431 HRCYNSSIMPVKQVLEARPDMCLVAEYPQEGS 462
            RC N    P++++ E R D+  VA++P   S
Sbjct: 389 KRC-NKPNFPLERLKEERSDVTFVADFPSTSS 419


>AT4G02760.2 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=506
          Length = 506

 Score =  248 bits (633), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 220/387 (56%), Gaps = 42/387 (10%)

Query: 72  QTELIDRALKIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASAT 131
           Q   +DR L++ S+L  + K+  RKRA+  NS +WPL P+LTIKVFS LDT+SL  ASA 
Sbjct: 83  QDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQASAC 142

Query: 132 CTLFNKCAKDPLCYENLDLTTLVPKVNNSVVSTMIQRAGKALRSLKLGVIPG-ATPSPGC 190
           CT+FNKCA D +CY ++DLTT    V+N VV  MI RAGK LRSLKLG I   A P+   
Sbjct: 143 CTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSISSSAEPT--- 199

Query: 191 CQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVXXXXXXXXXXXXXX 250
                                         +S+LTRSCL+PL+ +               
Sbjct: 200 ------------------------------TSLLTRSCLTPLTFN--HGFTGGHLRSLHL 227

Query: 251 YNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHYHLIERLFFESSKTGRD 310
           Y++  +D  SLS  LSAC +L DL+IVGL   L   L  ++ +  LIE LF E    G  
Sbjct: 228 YHLRMIDCGSLSPVLSACLNLTDLKIVGLDNPLE-QLGLLTRNCRLIEHLFIE--IYGAA 284

Query: 311 DSLKTQTCVELVDNCPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVNFSTSYSITGSFLR 370
             +   + +E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK++N S+S  I+G F R
Sbjct: 285 GLITDSSLLEFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEISGCFFR 344

Query: 371 NLGSYNGGNSLEALILRDCMHLKEVEVARLLTAILAGDFKSLLHLDISNREGLASEGDWY 430
            L      + LE LILRDC  LKE EV   L ++LAGDFK +  +D+SN +GL  +G   
Sbjct: 345 GLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLVCDGG-- 402

Query: 431 HRCYNSSIMPVKQVLEARPDMCLVAEY 457
           +R +     P++++ + R ++  VA +
Sbjct: 403 NRTFEPR-FPIEELKKQRSNVTFVAIF 428


>AT4G02760.1 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=506
          Length = 506

 Score =  248 bits (633), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 220/387 (56%), Gaps = 42/387 (10%)

Query: 72  QTELIDRALKIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASAT 131
           Q   +DR L++ S+L  + K+  RKRA+  NS +WPL P+LTIKVFS LDT+SL  ASA 
Sbjct: 83  QDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQASAC 142

Query: 132 CTLFNKCAKDPLCYENLDLTTLVPKVNNSVVSTMIQRAGKALRSLKLGVIPG-ATPSPGC 190
           CT+FNKCA D +CY ++DLTT    V+N VV  MI RAGK LRSLKLG I   A P+   
Sbjct: 143 CTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSISSSAEPT--- 199

Query: 191 CQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVXXXXXXXXXXXXXX 250
                                         +S+LTRSCL+PL+ +               
Sbjct: 200 ------------------------------TSLLTRSCLTPLTFN--HGFTGGHLRSLHL 227

Query: 251 YNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHYHLIERLFFESSKTGRD 310
           Y++  +D  SLS  LSAC +L DL+IVGL   L   L  ++ +  LIE LF E    G  
Sbjct: 228 YHLRMIDCGSLSPVLSACLNLTDLKIVGLDNPLE-QLGLLTRNCRLIEHLFIE--IYGAA 284

Query: 311 DSLKTQTCVELVDNCPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVNFSTSYSITGSFLR 370
             +   + +E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK++N S+S  I+G F R
Sbjct: 285 GLITDSSLLEFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEISGCFFR 344

Query: 371 NLGSYNGGNSLEALILRDCMHLKEVEVARLLTAILAGDFKSLLHLDISNREGLASEGDWY 430
            L      + LE LILRDC  LKE EV   L ++LAGDFK +  +D+SN +GL  +G   
Sbjct: 345 GLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLVCDGG-- 402

Query: 431 HRCYNSSIMPVKQVLEARPDMCLVAEY 457
           +R +     P++++ + R ++  VA +
Sbjct: 403 NRTFEPR-FPIEELKKQRSNVTFVAIF 428


>AT4G02760.3 | Symbols:  | RNI-like superfamily protein |
           chr4:1224336-1227857 REVERSE LENGTH=551
          Length = 551

 Score =  244 bits (624), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 158/391 (40%), Positives = 219/391 (56%), Gaps = 45/391 (11%)

Query: 72  QTELIDRALKIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASAT 131
           Q   +DR L++ S+L  + K+  RKRA+  NS +WPL P+LTIKVFS LDT+SL  ASA 
Sbjct: 83  QDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQASAC 142

Query: 132 CTLFNKCAKDPLCYENLDLTTLVPKVNNSVVSTMIQRAGKALRSLKLGVIPG-ATPSPGC 190
           CT+FNKCA D +CY ++DLTT    V+N VV  MI RAGK LRSLKLG I   A P+   
Sbjct: 143 CTMFNKCAMDRVCYSHIDLTTAAEDVDNGVVCVMIHRAGKELRSLKLGSISSSAEPT--- 199

Query: 191 CQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVXXXXXXXXXXXXXX 250
                                         +S+LTRSCL+PL+                 
Sbjct: 200 ------------------------------TSLLTRSCLTPLT--FNHGFTGGHLRSLHL 227

Query: 251 YNIERMDNVSLSGALSACPSLLDLEIVGLHVELR----LTLMSVSAHYHLIERLFFESSK 306
           Y++  +D  SLS  LSAC +L DL+IVGL    R      L  ++ +  LIE LF E   
Sbjct: 228 YHLRMIDCGSLSPVLSACLNLTDLKIVGLISGSRDNPLEQLGLLTRNCRLIEHLFIE--I 285

Query: 307 TGRDDSLKTQTCVELVDNCPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVNFSTSYSITG 366
            G    +   + +E   NCP+L+S+SL GF L+D  ++ L+KGFR+LK++N S+S  I+G
Sbjct: 286 YGAAGLITDSSLLEFAANCPNLSSISLLGFLLNDAILQKLIKGFRRLKHINLSSSPEISG 345

Query: 367 SFLRNLGSYNGGNSLEALILRDCMHLKEVEVARLLTAILAGDFKSLLHLDISNREGLASE 426
            F R L      + LE LILRDC  LKE EV   L ++LAGDFK +  +D+SN +GL  +
Sbjct: 346 CFFRGLELCGKDSPLETLILRDCYILKESEVLLFLNSLLAGDFKYIRLIDVSNVDGLVCD 405

Query: 427 GDWYHRCYNSSIMPVKQVLEARPDMCLVAEY 457
           G   +R +     P++++ + R ++  VA +
Sbjct: 406 GG--NRTFEPR-FPIEELKKQRSNVTFVAIF 433


>AT4G02733.1 | Symbols:  | F-box family protein |
           chr4:1210173-1211512 REVERSE LENGTH=301
          Length = 301

 Score =  158 bits (400), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 139/244 (56%), Gaps = 22/244 (9%)

Query: 72  QTELIDRALKIGSMLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASAT 131
           Q +L+DR L+  S+LL + K+ S+KRA+ HNSI+W LP +LT+KVFS +DT+SL  ASA 
Sbjct: 61  QDQLVDRTLERFSLLLQSTKRCSQKRATLHNSISWFLPSELTVKVFSMVDTKSLMQASAC 120

Query: 132 CTLFNKCAKDPLCYENLDLTTLVPKVNNSVVSTMIQRAGKALRSLKLGVI--PGATPSPG 189
           CT+FN CA DPLCY ++DLT     V++ V+ T++ R+GK LRSLKLG +  PG      
Sbjct: 121 CTMFNNCAMDPLCYFHIDLTKAFKHVDDRVLRTLLNRSGKQLRSLKLGRVDAPGCLFRSS 180

Query: 190 CCQPLVCPIRNAIVDVSNFSWTDKRSRQGRE----SSILTRSCLSPLSRDVXXXXXXXXX 245
           C  PL+    NA           +  + GR+     S+ TRSC  PL             
Sbjct: 181 CLPPLILYGNNA----------RRALKLGRDPPGLGSLFTRSCFDPLK------LTGNLL 224

Query: 246 XXXXXYNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHYHLIERLFFESS 305
                Y++  M+  S    LSAC +L DL+IVG++V L   L  ++ +  LIE LF ++ 
Sbjct: 225 TSLHIYSLGFMNMNSFLDPLSACSNLTDLKIVGVNVLLEPILELLARNCCLIEHLFLDNC 284

Query: 306 KTGR 309
             G+
Sbjct: 285 SQGK 288