Miyakogusa Predicted Gene
- Lj5g3v0976250.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0976250.2 tr|D7L1P0|D7L1P0_ARALL Time for coffee
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479750
PE=4,30.92,5e-18,seg,NULL,CUFF.54476.2
(475 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918... 96 5e-20
AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918... 96 6e-20
AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233... 77 3e-14
AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like | chr3:23336318-233... 71 1e-12
>AT3G22380.2 | Symbols: TIC | time for coffee | chr3:7913181-7918967
FORWARD LENGTH=1555
Length = 1555
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 28/302 (9%)
Query: 164 KFEIDLMATPPMMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVN---Q 220
KFEIDLMA PP+ S E + +E K +VE + ++ ED+++ ++ +
Sbjct: 487 KFEIDLMAPPPVRSSSERGGEMMECVAAEAKPKVTEVETEAKPLLK-EDRSDPAIHDSQE 545
Query: 221 EKTPEEIEEANMIEFKKKLNVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQ 280
+K P + EA +F++ LK DL +D+ + N ++ ++Q S+
Sbjct: 546 KKRPRMVAEAEHHKFERNCE-LKLDLD--KSDHVGLVNKHHVQKPPPQQQLSVP-----D 597
Query: 281 KIDHSSSVPLPAGVSGRPSNLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRK 340
K +S +PL + G P L ++G Q V TD + ++ + + +QP+ K
Sbjct: 598 KTAQASHLPLHMSMPGWPGGLPTMGYMAPTQGVVPTDTSSLSAAAMQPPPHLLFNQPRPK 657
Query: 341 RCATHYYIARNIL-HQQYTKMSPPLPAAIGPGSLCGIKPNNVDCVPSSSKQSQKHFPGVN 399
RCATH YIARNI HQQ+TKM+P PAA G + G K N+ +P + + Q G +
Sbjct: 658 RCATHCYIARNIQSHQQFTKMNPFWPAAAGSAPMYGTKACNLSLMPPT--ELQGSVLGRS 715
Query: 400 QKGAQEKVLVATSDPSLAAFRSSNNANPMDSTHMQLVLQQGPYPGSIGTLV-GPAFVFGP 458
Q+K +TS S A R+ QL+LQQ PG+ +++ GP F+F
Sbjct: 716 SNPVQDKNSQSTSKSSETAQRN------------QLMLQQALPPGAANSILHGPTFIFPL 763
Query: 459 GQ 460
GQ
Sbjct: 764 GQ 765
>AT3G22380.1 | Symbols: TIC | time for coffee | chr3:7913181-7918879
FORWARD LENGTH=1550
Length = 1550
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 28/302 (9%)
Query: 164 KFEIDLMATPPMMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVN---Q 220
KFEIDLMA PP+ S E + +E K +VE + ++ ED+++ ++ +
Sbjct: 487 KFEIDLMAPPPVRSSSERGGEMMECVAAEAKPKVTEVETEAKPLLK-EDRSDPAIHDSQE 545
Query: 221 EKTPEEIEEANMIEFKKKLNVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQ 280
+K P + EA +F++ LK DL +D+ + N ++ ++Q S+
Sbjct: 546 KKRPRMVAEAEHHKFERNCE-LKLDLD--KSDHVGLVNKHHVQKPPPQQQLSVP-----D 597
Query: 281 KIDHSSSVPLPAGVSGRPSNLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRK 340
K +S +PL + G P L ++G Q V TD + ++ + + +QP+ K
Sbjct: 598 KTAQASHLPLHMSMPGWPGGLPTMGYMAPTQGVVPTDTSSLSAAAMQPPPHLLFNQPRPK 657
Query: 341 RCATHYYIARNIL-HQQYTKMSPPLPAAIGPGSLCGIKPNNVDCVPSSSKQSQKHFPGVN 399
RCATH YIARNI HQQ+TKM+P PAA G + G K N+ +P + + Q G +
Sbjct: 658 RCATHCYIARNIQSHQQFTKMNPFWPAAAGSAPMYGTKACNLSLMPPT--ELQGSVLGRS 715
Query: 400 QKGAQEKVLVATSDPSLAAFRSSNNANPMDSTHMQLVLQQGPYPGSIGTLV-GPAFVFGP 458
Q+K +TS S A R+ QL+LQQ PG+ +++ GP F+F
Sbjct: 716 SNPVQDKNSQSTSKSSETAQRN------------QLMLQQALPPGAANSILHGPTFIFPL 763
Query: 459 GQ 460
GQ
Sbjct: 764 GQ 765
>AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like |
chr3:23336318-23340161 REVERSE LENGTH=978
Length = 978
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 162 VGKFEIDLMATPPMMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVNQE 221
+ K +I LM PP + S G +S L S+ KR +++ ++K V E
Sbjct: 282 ISKLDIHLM-VPPTLPSSSGR-VSLLPLVSDY--------CKRDSALKSKEKIT--VKNE 329
Query: 222 KTPEEIEEANMIEFKKKLNVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQK 281
PEE+++ ++ + LN+ D+ PN + D +N +L+ D ++ Q + +
Sbjct: 330 MNPEEVKQKK-VDKRYWLNL---DIEGPNQETDRDSNLRLQNLDWSQPQ-------QAKS 378
Query: 282 IDHSSSVPLPAGVSGRPSNLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRKR 341
HSS +PLP V+ PS + G L+Q D++ G SSK QG SQP+ KR
Sbjct: 379 APHSSVLPLPVAVASWPSGVPPQGHVALIQTGKPVDESNG-SSKLVQGAPISASQPRPKR 437
Query: 342 CATHYYIARNI-LHQQYTK 359
CATH++IARNI LHQ + K
Sbjct: 438 CATHFFIARNIQLHQHFLK 456
>AT3G63180.2 | Symbols: ATTKL, TKL | TIC-like |
chr3:23336318-23340161 REVERSE LENGTH=970
Length = 970
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 33/199 (16%)
Query: 162 VGKFEIDLMATPPMMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVNQE 221
+ K +I LM PP + S G +S L S+ KR +++ ++K V E
Sbjct: 282 ISKLDIHLM-VPPTLPSSSGR-VSLLPLVSDY--------CKRDSALKSKEKIT--VKNE 329
Query: 222 KTPEEIEEANMIEFKKKLNVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQK 281
PEE+++ ++ + LN+ D+ PN + D +N +L+ D ++ Q + +
Sbjct: 330 MNPEEVKQKK-VDKRYWLNL---DIEGPNQETDRDSNLRLQNLDWSQPQ-------QAKS 378
Query: 282 IDHSSSVPLPAGVSGRPSNLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRKR 341
HSS +PLP V+ PS + G L+Q D++ G S L QP+ KR
Sbjct: 379 APHSSVLPLPVAVASWPSGVPPQGHVALIQTGKPVDESNGSSK---------LVQPRPKR 429
Query: 342 CATHYYIARNI-LHQQYTK 359
CATH++IARNI LHQ + K
Sbjct: 430 CATHFFIARNIQLHQHFLK 448