Miyakogusa Predicted Gene

Lj5g3v0975900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975900.2 Non Chatacterized Hit- tr|I3T9W4|I3T9W4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.31,0,RNA
polymerase subunit,RNA polymerase, Rpb8; DNA-DIRECTED RNA POLYMERASES
I, II, AND III SUBUNIT RPA,CUFF.54466.2
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase R...   195   9e-51
AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymer...   193   3e-50

>AT3G59600.1 | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8
           | chr3:22016629-22017923 FORWARD LENGTH=146
          Length = 146

 Score =  195 bits (495), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 119/142 (83%), Gaps = 2/142 (1%)

Query: 4   ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
           I+F+DIF V+KL+PD KK F+KVTR+EARS   +MFMHLD+N+E+YPL VG KF L + P
Sbjct: 6   IMFEDIFVVDKLDPDGKK-FDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAP 64

Query: 64  TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGRE-KAELNISFGGLLMMMK 122
           TLN DGTPDTGY+ PG +++LAD +EY+M+GKLYKISE  G+  KAEL +SFGGLLM+++
Sbjct: 65  TLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLMLLQ 124

Query: 123 GDHSHCNKFELDQRLYLLMRKV 144
           GD +H + FELDQRL+LLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146


>AT1G54250.1 | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymerase
           Rpb8 | chr1:20255210-20256335 FORWARD LENGTH=146
          Length = 146

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 118/142 (83%), Gaps = 2/142 (1%)

Query: 4   ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
           ILF+DIF V++L+PD KK F+KVTR++A S   +MFMHLD+N+E+YPL VG KF L L P
Sbjct: 6   ILFEDIFVVDQLDPDGKK-FDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAP 64

Query: 64  TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGSGRE-KAELNISFGGLLMMMK 122
           TLN DGTPDTGY+ PG +++LAD +EY+M+GKLYKISE  G+  KAEL +SFGGLLM++K
Sbjct: 65  TLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLMLLK 124

Query: 123 GDHSHCNKFELDQRLYLLMRKV 144
           GD +H + FELDQRL+LLMRK+
Sbjct: 125 GDPAHISHFELDQRLFLLMRKL 146