Miyakogusa Predicted Gene

Lj5g3v0962840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962840.1 tr|A8HMH0|A8HMH0_CHLRE Predicted protein
(Fragment) OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_14670,33.93,4e-18,R3H domain,NULL;
R3H-assoc,R3H-associated N-terminal domain; seg,NULL,CUFF.54379.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03250.1 | Symbols:  | unknown protein; Has 89 Blast hits to ...   314   3e-86
AT1G03250.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   307   4e-84

>AT1G03250.1 | Symbols:  | unknown protein; Has 89 Blast hits to 89
           proteins in 31 species: Archae - 0; Bacteria - 0;
           Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other
           Eukaryotes - 10 (source: NCBI BLink). |
           chr1:793576-795159 REVERSE LENGTH=245
          Length = 245

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 149/232 (64%), Positives = 183/232 (78%), Gaps = 1/232 (0%)

Query: 16  LADPLKGDGAKSKGMSIEKKIEFLESFTGKVTNRRSRRWLNDRLLMELVPRLNAEEIRGL 75
           L DP +GD + S+G+S+EKKIE LES  G+V+NRRSRRWLNDR+LMELVPRL+A+EIRGL
Sbjct: 14  LIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLNDRILMELVPRLDAQEIRGL 73

Query: 76  FAPPPWGDEVPPSTFSMTNVEEWDRFRNIDMDKEVNIIHALENTLDKKKGHVDADKLAVL 135
           FAPPPWGD+VPPS FS+TNV EWD+FRNIDMDKE NI+ +L  +  ++KG VD DK+AVL
Sbjct: 74  FAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEANIMDSLNRSSVRQKGSVDGDKIAVL 133

Query: 136 NAWHRVDCKTRDALRRSSLSELIEGYEECVRTFITEKTDGDVLELQIQDPFHRLLLHGVC 195
           NAW R+DC+TRDALRRS L ELIEGYE C+  FI E  +GDVLEL++QDPFHRLLLHGVC
Sbjct: 134 NAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEEGGEGDVLELKVQDPFHRLLLHGVC 193

Query: 196 EFYNLASDTVTDFNGGESSXXXXXXXXXRG-SPEILKITLSHFLKMTKEGSW 246
           E++NL S T T+  G  +           G S E   I+L+HFL+M+KEG+W
Sbjct: 194 EYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKPSISLAHFLRMSKEGAW 245


>AT1G03250.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages. |
           chr1:793576-795159 REVERSE LENGTH=251
          Length = 251

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 183/238 (76%), Gaps = 7/238 (2%)

Query: 16  LADPLKGDGAKSKGMSIEKKIEFLESFTGKVTNRRSRRWLNDRLLMELVPRLNAEEIRGL 75
           L DP +GD + S+G+S+EKKIE LES  G+V+NRRSRRWLNDR+LMELVPRL+A+EIRGL
Sbjct: 14  LIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLNDRILMELVPRLDAQEIRGL 73

Query: 76  FAPPPWGDEVPPSTFSMTNVEEWDRFRNIDMDKE------VNIIHALENTLDKKKGHVDA 129
           FAPPPWGD+VPPS FS+TNV EWD+FRNIDMDKE       NI+ +L  +  ++KG VD 
Sbjct: 74  FAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQANIMDSLNRSSVRQKGSVDG 133

Query: 130 DKLAVLNAWHRVDCKTRDALRRSSLSELIEGYEECVRTFITEKTDGDVLELQIQDPFHRL 189
           DK+AVLNAW R+DC+TRDALRRS L ELIEGYE C+  FI E  +GDVLEL++QDPFHRL
Sbjct: 134 DKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEEGGEGDVLELKVQDPFHRL 193

Query: 190 LLHGVCEFYNLASDTVTDFNGGESSXXXXXXXXXRG-SPEILKITLSHFLKMTKEGSW 246
           LLHGVCE++NL S T T+  G  +           G S E   I+L+HFL+M+KEG+W
Sbjct: 194 LLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKPSISLAHFLRMSKEGAW 251