Miyakogusa Predicted Gene

Lj5g3v0962660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962660.1 tr|B9H1H5|B9H1H5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555374 PE=4
SV=1,43.48,9e-18,seg,NULL,CUFF.54362.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63095.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-13

>AT3G63095.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:23315506-23316258 FORWARD
           LENGTH=250
          Length = 250

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 39/50 (78%)

Query: 98  EENCCRWAGELDSQCVCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGG 147
           ++ CC+W  ++D++CVC++LVRLPP L +P H Y+V + ESC +T+ CGG
Sbjct: 197 QQECCKWLKQMDNECVCDLLVRLPPLLAKPIHNYTVFVDESCIVTFVCGG 246