Miyakogusa Predicted Gene

Lj5g3v0962410.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962410.2 Non Chatacterized Hit- tr|D8T3E5|D8T3E5_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.58,0.0000000000001,seg,NULL; coiled-coil,NULL,CUFF.54353.2
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) | chr2:196...   105   1e-23
AT2G48120.2 | Symbols: PAC | pale cress protein (PAC) | chr2:196...    89   1e-18

>AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) |
           chr2:19679870-19681351 FORWARD LENGTH=313
          Length = 313

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 49  RRCVSKEKEEDVLLEGMPDHYYDDEWQAKQXXXXXXXXXXXXXXXXXXXXXXXXXXXIGM 108
           RRC     E  VLLEGMP  YYDDEWQA+Q                           IG 
Sbjct: 40  RRCSGNNDE--VLLEGMPPEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGT 97

Query: 109 RLKGYPEEDVRKARKLVSSFIRXXXXXXXXXXXXXXXXXLDELVLMVIWNRLDLARRDDE 168
           RLK +PE+D+RKARKLVSSFIR                 LDELVLM+IWNRLDLARRDDE
Sbjct: 98  RLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDE 157


>AT2G48120.2 | Symbols: PAC | pale cress protein (PAC) |
           chr2:19679870-19681351 FORWARD LENGTH=307
          Length = 307

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 49  RRCVSKEKEEDVLLEGMPDHYYDDEWQAKQXXXXXXXXXXXXXXXXXXXXXXXXXXXIGM 108
           RRC     E  VLLEGMP  YYDD  + K+                           IG 
Sbjct: 40  RRCSGNNDE--VLLEGMPPEYYDDREKTKELRRMQREEEEEEERKIEEYRE------IGT 91

Query: 109 RLKGYPEEDVRKARKLVSSFIRXXXXXXXXXXXXXXXXXLDELVLMVIWNRLDLARRDDE 168
           RLK +PE+D+RKARKLVSSFIR                 LDELVLM+IWNRLDLARRDDE
Sbjct: 92  RLKEFPEQDLRKARKLVSSFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDE 151