Miyakogusa Predicted Gene

Lj5g3v0962410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962410.1 tr|G7IEG8|G7IEG8_MEDTR PAC OS=Medicago truncatula
GN=MTR_1g072620 PE=4 SV=1,77.55,0.0000005,seg,NULL;
coiled-coil,NULL,CUFF.54353.1
         (307 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) | chr2:196...   301   4e-82
AT2G48120.2 | Symbols: PAC | pale cress protein (PAC) | chr2:196...   285   2e-77

>AT2G48120.1 | Symbols: PAC | pale cress protein (PAC) |
           chr2:19679870-19681351 FORWARD LENGTH=313
          Length = 313

 Score =  301 bits (771), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 202/306 (66%), Gaps = 15/306 (4%)

Query: 6   RLVLSTTQLLSKLIFSLHVLWVLLAGLRRCVSKEKEEDVLLEGMPDHYYDDEWQAKQXXX 65
           R++ +T +L ++L  S        A  RR  S   +E VLLEGMP  YYDDEWQA+Q   
Sbjct: 19  RVISATKKLTTELSIST-------AKFRRRCSGNNDE-VLLEGMPPEYYDDEWQARQREK 70

Query: 66  XXXXXXXXXXXXXXXXXXXXXXXXIGMRLKGYPEEDVRKARKLVSSFIRXXXXXXXXXXX 125
                                   IG RLK +PE+D+RKARKLVSSFIR           
Sbjct: 71  TKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVSSFIRAAEEVEERIEE 130

Query: 126 XXXXXXLDELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKQEATPAMRLLNDL 185
                 LDELVLM+IWNRLDLARRDDEKDAIRSLDLLYRRVETEILK++A+PAM+LLNDL
Sbjct: 131 AAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDL 190

Query: 186 LVMYDGFNLEEWLRKCKKIMIDTFPREDPFSILVPPGFESFDLDKHQGPLRLPL--EADD 243
           L M+DGF  + WL+ C+K M +TFPREDPFSIL+PPG   FD+D HQG LR P+  E D+
Sbjct: 191 LNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPG---FDIDMHQGQLRPPIETETDN 247

Query: 244 TLLRVDFVREVDELLQXX--XXXXXXXXXXPGFDPQSVASRLKQQEKQQTIRQVEALLDL 301
           TLLRVDFVREVD LLQ               G DP+++A + KQQEKQ+TIRQ+EA+LDL
Sbjct: 248 TLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTIRQIEAILDL 307

Query: 302 AISLKW 307
           A++LKW
Sbjct: 308 ALNLKW 313


>AT2G48120.2 | Symbols: PAC | pale cress protein (PAC) |
           chr2:19679870-19681351 FORWARD LENGTH=307
          Length = 307

 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/306 (53%), Positives = 199/306 (65%), Gaps = 21/306 (6%)

Query: 6   RLVLSTTQLLSKLIFSLHVLWVLLAGLRRCVSKEKEEDVLLEGMPDHYYDDEWQAKQXXX 65
           R++ +T +L ++L  S        A  RR  S   +E VLLEGMP  YYDD  + K+   
Sbjct: 19  RVISATKKLTTELSIST-------AKFRRRCSGNNDE-VLLEGMPPEYYDDREKTKELRR 70

Query: 66  XXXXXXXXXXXXXXXXXXXXXXXXIGMRLKGYPEEDVRKARKLVSSFIRXXXXXXXXXXX 125
                                   IG RLK +PE+D+RKARKLVSSFIR           
Sbjct: 71  MQREEEEEEERKIEEYRE------IGTRLKEFPEQDLRKARKLVSSFIRAAEEVEERIEE 124

Query: 126 XXXXXXLDELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKQEATPAMRLLNDL 185
                 LDELVLM+IWNRLDLARRDDEKDAIRSLDLLYRRVETEILK++A+PAM+LLNDL
Sbjct: 125 AAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDL 184

Query: 186 LVMYDGFNLEEWLRKCKKIMIDTFPREDPFSILVPPGFESFDLDKHQGPLRLPL--EADD 243
           L M+DGF  + WL+ C+K M +TFPREDPFSIL+PPG   FD+D HQG LR P+  E D+
Sbjct: 185 LNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPG---FDIDMHQGQLRPPIETETDN 241

Query: 244 TLLRVDFVREVDELLQXX--XXXXXXXXXXPGFDPQSVASRLKQQEKQQTIRQVEALLDL 301
           TLLRVDFVREVD LLQ               G DP+++A + KQQEKQ+TIRQ+EA+LDL
Sbjct: 242 TLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQRTIRQIEAILDL 301

Query: 302 AISLKW 307
           A++LKW
Sbjct: 302 ALNLKW 307