Miyakogusa Predicted Gene

Lj5g3v0962370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962370.1 Non Chatacterized Hit- tr|C4JBA6|C4JBA6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,67.61,1e-16,seg,NULL;
coiled-coil,NULL; PGBD-like,Peptidoglycan binding-like; no
description,Peptidoglycan bindi,CUFF.54343.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active ...   253   2e-67

>AT4G13670.1 | Symbols: PTAC5 | plastid transcriptionally active 5 |
           chr4:7948644-7950779 FORWARD LENGTH=387
          Length = 387

 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/213 (57%), Positives = 162/213 (76%), Gaps = 9/213 (4%)

Query: 176 LRVGSEGEEVRQMQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTSE 235
           L+VGSEG++V+ +QEALLKLGFYSGEEDMEFSSFSSGT  AVKTWQASLG  EDG+MT+E
Sbjct: 178 LKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAE 237

Query: 236 LIERLYLEIATPTNDKGSTNENKISTTVLRKESENGSAVASVTEISDIQQKVVGGGV-KE 294
           L++RL++       D+    +   ++T+ ++E+ NG+   SVT++ + +Q +V     +E
Sbjct: 238 LLQRLFM-------DEDVETDKDEASTMKKEEAGNGAVFTSVTQVPEKKQSIVKDQSDRE 290

Query: 295 TEASRPRVFLLGENRWEDSSKL-GASDGVDRSKNKDGTTKCVQCRGEGRLLCTECDGGGE 353
            + ++ RVFLLGENRWED S+L G +  VDRS++ +  T+C+ CRGEGRL+C ECDG GE
Sbjct: 291 VDVTQNRVFLLGENRWEDPSRLIGRNKPVDRSESTNTKTRCITCRGEGRLMCLECDGTGE 350

Query: 354 PNIEPQFMELVEDGTKCPYCEGLGYTPCDLCGG 386
           PNIEPQFME V + TKCPYCEGLGYT CD+C G
Sbjct: 351 PNIEPQFMEWVGEDTKCPYCEGLGYTVCDVCDG 383