Miyakogusa Predicted Gene

Lj5g3v0931390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0931390.1 tr|F2E4F7|F2E4F7_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,43.9,4e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.54349.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10250.2 | Symbols:  | Plant protein 1589 of unknown function...   114   3e-26
AT3G10250.1 | Symbols:  | Plant protein 1589 of unknown function...   114   3e-26
AT5G04090.1 | Symbols:  | Plant protein 1589 of unknown function...    91   2e-19
AT5G04090.2 | Symbols:  | Plant protein 1589 of unknown function...    91   2e-19

>AT3G10250.2 | Symbols:  | Plant protein 1589 of unknown function |
           chr3:3168371-3170418 REVERSE LENGTH=324
          Length = 324

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 2/152 (1%)

Query: 2   FSNDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSP 61
           F N  S+LNT++ + + +S HA R+             M ++QG+NGGMIKSE  ++   
Sbjct: 146 FLNGSSTLNTNVPSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPA 205

Query: 62  SYIFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLS 121
           S+++G +   L+    +GD               ++  LL+ + S+FG LGQI RN SLS
Sbjct: 206 SFMYGGERNALEGHSAVGD-TSIPNFSNESNNQPLSDPLLEAEASTFGFLGQIPRNFSLS 264

Query: 122 DLTADFSQSSDIMESYPRCPYLATN-ENFLES 152
           DLTADFSQSS+I+ESY R P+L  N ENFL+S
Sbjct: 265 DLTADFSQSSEILESYDRSPFLVPNAENFLDS 296


>AT3G10250.1 | Symbols:  | Plant protein 1589 of unknown function |
           chr3:3168371-3170418 REVERSE LENGTH=324
          Length = 324

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 2/152 (1%)

Query: 2   FSNDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSP 61
           F N  S+LNT++ + + +S HA R+             M ++QG+NGGMIKSE  ++   
Sbjct: 146 FLNGSSTLNTNVPSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPA 205

Query: 62  SYIFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLS 121
           S+++G +   L+    +GD               ++  LL+ + S+FG LGQI RN SLS
Sbjct: 206 SFMYGGERNALEGHSAVGD-TSIPNFSNESNNQPLSDPLLEAEASTFGFLGQIPRNFSLS 264

Query: 122 DLTADFSQSSDIMESYPRCPYLATN-ENFLES 152
           DLTADFSQSS+I+ESY R P+L  N ENFL+S
Sbjct: 265 DLTADFSQSSEILESYDRSPFLVPNAENFLDS 296


>AT5G04090.1 | Symbols:  | Plant protein 1589 of unknown function |
           chr5:1105672-1107092 REVERSE LENGTH=264
          Length = 264

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 81/147 (55%), Gaps = 11/147 (7%)

Query: 7   SSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSPSYIFG 66
           S++NT++ + V+ S+H+ R+             M L+QG    MIKSE  Y     Y++G
Sbjct: 100 SAINTNIPSYVDFSSHSRRVDPSPNSLSLQATNMPLMQG----MIKSETAYQNCAPYMYG 155

Query: 67  PDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLSDLTAD 126
            +     A  T+GD               +N  L+D D  +FG LGQI +N SLSDLTAD
Sbjct: 156 GE-----AQSTVGD-VTIASFSNDSSNQSLNDPLVDPDAPTFGSLGQIPQNFSLSDLTAD 209

Query: 127 FSQSSDIMESYPRCPY-LATNENFLES 152
           FSQSSDI+ESY   P+ LA  ENFL+S
Sbjct: 210 FSQSSDILESYEGSPFLLADAENFLDS 236


>AT5G04090.2 | Symbols:  | Plant protein 1589 of unknown function |
           chr5:1105672-1107629 REVERSE LENGTH=305
          Length = 305

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 81/147 (55%), Gaps = 11/147 (7%)

Query: 7   SSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSPSYIFG 66
           S++NT++ + V+ S+H+ R+             M L+QG    MIKSE  Y     Y++G
Sbjct: 141 SAINTNIPSYVDFSSHSRRVDPSPNSLSLQATNMPLMQG----MIKSETAYQNCAPYMYG 196

Query: 67  PDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLSDLTAD 126
            +     A  T+GD               +N  L+D D  +FG LGQI +N SLSDLTAD
Sbjct: 197 GE-----AQSTVGD-VTIASFSNDSSNQSLNDPLVDPDAPTFGSLGQIPQNFSLSDLTAD 250

Query: 127 FSQSSDIMESYPRCPY-LATNENFLES 152
           FSQSSDI+ESY   P+ LA  ENFL+S
Sbjct: 251 FSQSSDILESYEGSPFLLADAENFLDS 277