Miyakogusa Predicted Gene

Lj5g3v0931380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0931380.1 Non Chatacterized Hit- tr|Q9LZA1|Q9LZA1_ARATH
Putative uncharacterized protein F8F6_300 (Fragment)
O,43.7,5e-17,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.54348.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10250.2 | Symbols:  | Plant protein 1589 of unknown function...    90   7e-19
AT3G10250.1 | Symbols:  | Plant protein 1589 of unknown function...    90   7e-19
AT5G04090.2 | Symbols:  | Plant protein 1589 of unknown function...    72   2e-13
AT5G04090.1 | Symbols:  | Plant protein 1589 of unknown function...    72   3e-13

>AT3G10250.2 | Symbols:  | Plant protein 1589 of unknown function |
           chr3:3168371-3170418 REVERSE LENGTH=324
          Length = 324

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 2   FSNDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSP 61
           F N  S+LNT++ + + +S HA R+             M ++QG+NGGMIKSE  ++   
Sbjct: 146 FLNGSSTLNTNVPSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPA 205

Query: 62  SYIFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLS 121
           S+++G +   L+    +GD               ++  LL+ + S+FG LGQI RN SLS
Sbjct: 206 SFMYGGERNALEGHSAVGD-TSIPNFSNESNNQPLSDPLLEAEASTFGFLGQIPRNFSLS 264

Query: 122 DLTADFSQSS 131
           DLTADFSQSS
Sbjct: 265 DLTADFSQSS 274


>AT3G10250.1 | Symbols:  | Plant protein 1589 of unknown function |
           chr3:3168371-3170418 REVERSE LENGTH=324
          Length = 324

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 2   FSNDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSP 61
           F N  S+LNT++ + + +S HA R+             M ++QG+NGGMIKSE  ++   
Sbjct: 146 FLNGSSTLNTNVPSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNPA 205

Query: 62  SYIFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLS 121
           S+++G +   L+    +GD               ++  LL+ + S+FG LGQI RN SLS
Sbjct: 206 SFMYGGERNALEGHSAVGD-TSIPNFSNESNNQPLSDPLLEAEASTFGFLGQIPRNFSLS 264

Query: 122 DLTADFSQSS 131
           DLTADFSQSS
Sbjct: 265 DLTADFSQSS 274


>AT5G04090.2 | Symbols:  | Plant protein 1589 of unknown function |
           chr5:1105672-1107629 REVERSE LENGTH=305
          Length = 305

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 10/129 (7%)

Query: 7   SSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSPSYIFG 66
           S++NT++ + V+ S+H+ R+             M L+QG    MIKSE  Y     Y++G
Sbjct: 141 SAINTNIPSYVDFSSHSRRVDPSPNSLSLQATNMPLMQG----MIKSETAYQNCAPYMYG 196

Query: 67  PDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLSDLTAD 126
            +     A  T+GD               +N  L+D D  +FG LGQI +N SLSDLTAD
Sbjct: 197 GE-----AQSTVGD-VTIASFSNDSSNQSLNDPLVDPDAPTFGSLGQIPQNFSLSDLTAD 250

Query: 127 FSQSSGMFS 135
           FSQSS +  
Sbjct: 251 FSQSSDILE 259


>AT5G04090.1 | Symbols:  | Plant protein 1589 of unknown function |
           chr5:1105672-1107092 REVERSE LENGTH=264
          Length = 264

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 4   NDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGSPSY 63
           N  S++NT++ + V+ S+H+ R+             M L+QG    MIKSE  Y     Y
Sbjct: 97  NGGSAINTNIPSYVDFSSHSRRVDPSPNSLSLQATNMPLMQG----MIKSETAYQNCAPY 152

Query: 64  IFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSLSDL 123
           ++G      +A  T+GD               +N  L+D D  +FG LGQI +N SLSDL
Sbjct: 153 MYG-----GEAQSTVGD-VTIASFSNDSSNQSLNDPLVDPDAPTFGSLGQIPQNFSLSDL 206

Query: 124 TADFSQSS 131
           TADFSQSS
Sbjct: 207 TADFSQSS 214