Miyakogusa Predicted Gene

Lj5g3v0921030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0921030.1 Non Chatacterized Hit- tr|I1NY64|I1NY64_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,64.71,6e-17,zinc
finger,Zinc finger, CCCH-type; K homology RNA-binding domain,K
Homology domain; no description,,CUFF.54231.1
         (257 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12130.1 | Symbols:  | KH domain-containing protein / zinc fi...   219   1e-57
AT5G06770.1 | Symbols:  | KH domain-containing protein / zinc fi...   216   9e-57

>AT3G12130.1 | Symbols:  | KH domain-containing protein / zinc
           finger (CCCH type) family protein | chr3:3864486-3866406
           REVERSE LENGTH=248
          Length = 248

 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 151/260 (58%), Gaps = 22/260 (8%)

Query: 1   MDFRKRGRSEVAV----NGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFR 56
           MD RKRGR E        G  KK+KQEMES STG+GSK +PCTKFFST+GCPFGE CHF 
Sbjct: 1   MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60

Query: 57  HHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXXXXXXXXXRLIAPPGLASSF 116
           H+VPGGY  V QM N    +   Q SRN+                   R  + PG  S+F
Sbjct: 61  HYVPGGYNAVSQMTNMGPPIP--QVSRNMQG--------SGNGGRFSGRGESGPGHVSNF 110

Query: 117 GXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQI 176
           G              GAIIGKGG +SKQIC QTG KLSI++HE DPNL+NI L G+ EQI
Sbjct: 111 GDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQI 170

Query: 177 ENASNMVRELI--LTGSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAK 234
             AS MV++LI  L  +   PP                  G P P  SNFKTK+C+ F+K
Sbjct: 171 SEASAMVKDLIGRLNSAAKKPPGGGLGG-----GGGMGSEGKPHP-GSNFKTKICERFSK 224

Query: 235 GSCAYGERCHFAHGAANLRK 254
           G+C +G+RCHFAHG A LRK
Sbjct: 225 GNCTFGDRCHFAHGEAELRK 244


>AT5G06770.1 | Symbols:  | KH domain-containing protein / zinc
           finger (CCCH type) family protein | chr5:2090937-2092787
           REVERSE LENGTH=240
          Length = 240

 Score =  216 bits (551), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 127/258 (49%), Positives = 151/258 (58%), Gaps = 26/258 (10%)

Query: 1   MDFRKRGRSEVAV----NGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFR 56
           MD RKRGR E A     NG  K++KQEMES+STG+GSK +PCTKFFST+GCPFG+ CHF 
Sbjct: 1   MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60

Query: 57  HHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXXXXXXXXXRLIAPPGLASSF 116
           H+VPGGY    QM N    V  SQ SRN+                   R     G  S F
Sbjct: 61  HYVPGGYNAAAQMTNLRPPV--SQVSRNMQG-------SGGPGGRFSGRGDPGSGPVSIF 111

Query: 117 GXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQI 176
           G              GAIIGKGG +SKQIC +TGAKLSI++HE DPNL+ IEL G+FEQI
Sbjct: 112 GASTSKISVDASLA-GAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQI 170

Query: 177 ENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAKGS 236
             AS MVRELI     L   K    + G   K  P          SN+KTK+C  ++KG+
Sbjct: 171 NVASGMVRELI---GRLGSVKKPQGIGGPEGKPHPG---------SNYKTKICDRYSKGN 218

Query: 237 CAYGERCHFAHGAANLRK 254
           C YG+RCHFAHG + LR+
Sbjct: 219 CTYGDRCHFAHGESELRR 236