Miyakogusa Predicted Gene

Lj5g3v0920980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0920980.1 Non Chatacterized Hit- tr|A2YZ98|A2YZ98_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,33.89,1e-18,coiled-coil,NULL; seg,NULL,CUFF.54228.1
         (337 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57990.1 | Symbols:  | unknown protein; Has 1497 Blast hits t...   278   3e-75

>AT3G57990.1 | Symbols:  | unknown protein; Has 1497 Blast hits to
           1323 proteins in 52 species: Archae - 0; Bacteria - 4;
           Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0;
           Other Eukaryotes - 1375 (source: NCBI BLink). |
           chr3:21470244-21471347 REVERSE LENGTH=367
          Length = 367

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/304 (51%), Positives = 199/304 (65%), Gaps = 22/304 (7%)

Query: 1   MKASLKFRDEQKKPLFRAKVPLSVLGMPFQSGIVAGDSKELTLNLATFFQSGPSIRASYR 60
           MKAS+KFR+EQK PLFRAKVPLS+LG+PFQSGIVAG+SKEL+LNL+TFF+SGPS++ +YR
Sbjct: 1   MKASMKFREEQK-PLFRAKVPLSILGLPFQSGIVAGESKELSLNLSTFFESGPSLKVAYR 59

Query: 61  PNDSKNPFSVVVKTGTGPFGSPLSGSMLMSCEFNLLARSGGPLFMLHFKPRFGDFTFKKT 120
           PNDS NPFS++VKTG+G FGSP+S SMLMS EFNLL + G P FMLHFKP+FGDF+ KK+
Sbjct: 60  PNDSWNPFSLIVKTGSGSFGSPISSSMLMSAEFNLLGQ-GNPSFMLHFKPQFGDFSIKKS 118

Query: 121 QXXX-----XXXXXXXXXXXXXXXXXVVEKPVIGSFSAG--KVPIFGSDSPAAGAIVSAF 173
                                     VV+ P +     G  KV +  S S  AG I    
Sbjct: 119 HSSSGFERNLIKSMNGSVSEDDSSIEVVDTPAVNGCGGGFRKVTVLPSTS--AGDIAGLL 176

Query: 174 SGMEVAARTTLPVRGRAAVNFRWGVRVPAEVKAIGNNSSG-AFQRIPFLVMDKIGFELLP 232
           SG+EVAART+LPVRGRA +NFRWGVRVP E++   + ++  + +R PFLVM+KIG E + 
Sbjct: 177 SGVEVAARTSLPVRGRAVLNFRWGVRVPTEIRRDFDPTAAISLRRFPFLVMNKIGIEHVD 236

Query: 233 ELNGELKKGNGGASEGSG---FVAGSDVAEACLAVKRQMEVLQLENGSLRSAVEDLRREI 289
             + ++ K  G   + SG   F    DVAE        +E L+ EN  L+ AVEDLR  I
Sbjct: 237 GADAKVTKSTGDPGKVSGPAQFTTSGDVAEV-------IEELRTENKQLKRAVEDLREVI 289

Query: 290 GGGR 293
              R
Sbjct: 290 SNVR 293