Miyakogusa Predicted Gene

Lj5g3v0878420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0878420.1 tr|A2Q6E2|A2Q6E2_MEDTR Cryptochrome OS=Medicago
truncatula GN=MTR_5g063920 PE=4 SV=1,94.65,0,Cryptochrome/photolyase
FAD-binding domain,DNA photolyase, FAD-binding/Cryptochrome,
C-terminal; Cry,NODE_31858_length_1305_cov_194.942535.path3.1
         (365 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochr...   615   e-176
AT1G04400.1 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypto...   447   e-126
AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypto...   447   e-126
AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein | ch...    91   2e-18
AT3G15620.2 | Symbols: UVR3 | DNA photolyase family protein | ch...    91   2e-18
AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538...    55   6e-08

>AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome
           1 | chr4:5724260-5726905 FORWARD LENGTH=681
          Length = 681

 Score =  615 bits (1587), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/348 (84%), Positives = 314/348 (90%)

Query: 9   IVWFRRDLRVEDNPXXXXXXXXXXXXXXFIWAPEEEGQYYPGRVSRWWLKNSLATLDSSL 68
           IVWFRRDLRVEDNP              F+WAPEEEG Y+PGRVSRWWLKNSLA LDSSL
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74

Query: 69  RSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLTAQGITVR 128
           RSLGT LITKRSTDSV+SLL+VVKSTGA+QIFFNHLYDPLSLVRDHRAK+VLTAQGI VR
Sbjct: 75  RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134

Query: 129 SFNSDLLYEPWDVNDANGQPFTTFDAFWERCLTMPYDPQAPLLPPKRIIPGDASRCPSDT 188
           SFN+DLLYEPW+V D  G+PF+ F AFWERCL+MPYDP++PLLPPK+II GD S+C +D 
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194

Query: 189 LVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHL 248
           LVFED+SEK SNALLARAWSPGWSN DKALT FINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254

Query: 249 HFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 308
           HFGEVSV+KVFHLVRIKQV WANEGN AGEESVNLFLKSIGLREYSRYISFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314

Query: 309 LLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 356
           LLGHLKFFPW V+E YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 362


>AT1G04400.1 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 |
           cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612
          Length = 612

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/363 (57%), Positives = 269/363 (74%), Gaps = 6/363 (1%)

Query: 8   SIVWFRRDLRVEDNPXXXXXXXXXXXXXXFIWAPEEEGQYYPGRVSRWWLKNSLATLDSS 67
           +IVWFRRDLR+EDNP              FIW PEEEGQ+YPGR SRWW+K SLA L  S
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66

Query: 68  LRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLTAQGITV 127
           L++LG+ L   ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH  KE L  +GI+V
Sbjct: 67  LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126

Query: 128 RSFNSDLLYEPWDVNDANGQPFTTFDAFWERCLTMPYDPQAPLLPPKRIIPGDASR---- 183
           +S+N DLLYEPW++    G+PFT+F+++W++CL M  +    L PP R++P  A+     
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185

Query: 184 -CPSDTLVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTS 242
            C  + L  E+E+EK SNALL RAWSPGWSNADK L  FI   LI+Y+KN +K    +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245

Query: 243 FLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHP 302
            LSP+LHFGE+SV+ VF   R+KQ++WA + N  GEES +LFL+ IGLREYSRYI FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305

Query: 303 YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 362
           ++HE+ LL HL+FFPW  +   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365

Query: 363 FVK 365
            VK
Sbjct: 366 AVK 368


>AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 |
           cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612
          Length = 612

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/363 (57%), Positives = 269/363 (74%), Gaps = 6/363 (1%)

Query: 8   SIVWFRRDLRVEDNPXXXXXXXXXXXXXXFIWAPEEEGQYYPGRVSRWWLKNSLATLDSS 67
           +IVWFRRDLR+EDNP              FIW PEEEGQ+YPGR SRWW+K SLA L  S
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66

Query: 68  LRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLTAQGITV 127
           L++LG+ L   ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH  KE L  +GI+V
Sbjct: 67  LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126

Query: 128 RSFNSDLLYEPWDVNDANGQPFTTFDAFWERCLTMPYDPQAPLLPPKRIIPGDASR---- 183
           +S+N DLLYEPW++    G+PFT+F+++W++CL M  +    L PP R++P  A+     
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185

Query: 184 -CPSDTLVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTS 242
            C  + L  E+E+EK SNALL RAWSPGWSNADK L  FI   LI+Y+KN +K    +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245

Query: 243 FLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHP 302
            LSP+LHFGE+SV+ VF   R+KQ++WA + N  GEES +LFL+ IGLREYSRYI FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305

Query: 303 YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 362
           ++HE+ LL HL+FFPW  +   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365

Query: 363 FVK 365
            VK
Sbjct: 366 AVK 368


>AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein |
           chr3:5293475-5296548 REVERSE LENGTH=556
          Length = 556

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 167/392 (42%), Gaps = 50/392 (12%)

Query: 5   GACSIVWFRRDLRVEDNPXXXXXXXXXXXXX-XFIWAPE----EEGQYYPGR----VSRW 55
           G+ S++WFR+ LRV DNP               F+  P     +   + PG     V+R 
Sbjct: 23  GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 82

Query: 56  -WLKNSLATLDSSLRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDH 114
            +L  SL  LDSSL+ LG+ L+  +  +    L+  ++     ++ F +  DP     D 
Sbjct: 83  RFLLESLKDLDSSLKKLGSRLLVFKG-EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDV 141

Query: 115 RAKEVLTAQGITVRSFNSDLLYEPWDVNDANG-QPFTTFDAFWE-----RC----LTMPY 164
           + K+  ++ G+ V S  S  L+ P  + + NG +P  ++ +F +      C    L M Y
Sbjct: 142 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY 201

Query: 165 DPQAPLLPPKRIIPG-DASRCPS-DTLVFEDESEKASNALLARAWSP---GWSNADKALT 219
                 LPP   I     S  PS + L ++D+ +          W+P   G S A K LT
Sbjct: 202 SS----LPPIGDIGNLGISEVPSLEELGYKDDEQAD--------WTPFRGGESEALKRLT 249

Query: 220 AFINGPLIEYSKNRRKADSAT-----TSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGN 274
             I+      +  + K D +      T+ +SP+L FG +S +  +      Q L     +
Sbjct: 250 KSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFY------QCLQNIYKD 303

Query: 275 IAGEESVNL-FLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRT 333
           +    S  +  L  +  RE+    +F  P   +       K  PW  +     AWR G+T
Sbjct: 304 VKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKT 363

Query: 334 GYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 365
           GYP +DA M +L   GW+H   R  V+ F  +
Sbjct: 364 GYPWIDAIMVQLLKWGWMHHLARHCVACFLTR 395


>AT3G15620.2 | Symbols: UVR3 | DNA photolyase family protein |
           chr3:5294201-5296548 REVERSE LENGTH=445
          Length = 445

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 167/392 (42%), Gaps = 50/392 (12%)

Query: 5   GACSIVWFRRDLRVEDNPXXXXXXXXXXXXX-XFIWAPE----EEGQYYPGR----VSRW 55
           G+ S++WFR+ LRV DNP               F+  P     +   + PG     V+R 
Sbjct: 23  GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRI 82

Query: 56  -WLKNSLATLDSSLRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDH 114
            +L  SL  LDSSL+ LG+ L+  +  +    L+  ++     ++ F +  DP     D 
Sbjct: 83  RFLLESLKDLDSSLKKLGSRLLVFKG-EPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDV 141

Query: 115 RAKEVLTAQGITVRSFNSDLLYEPWDVNDANG-QPFTTFDAFWE-----RC----LTMPY 164
           + K+  ++ G+ V S  S  L+ P  + + NG +P  ++ +F +      C    L M Y
Sbjct: 142 KVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMSY 201

Query: 165 DPQAPLLPPKRIIPG-DASRCPS-DTLVFEDESEKASNALLARAWSP---GWSNADKALT 219
                 LPP   I     S  PS + L ++D+ +          W+P   G S A K LT
Sbjct: 202 SS----LPPIGDIGNLGISEVPSLEELGYKDDEQAD--------WTPFRGGESEALKRLT 249

Query: 220 AFINGPLIEYSKNRRKADSAT-----TSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGN 274
             I+      +  + K D +      T+ +SP+L FG +S +  +      Q L     +
Sbjct: 250 KSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFY------QCLQNIYKD 303

Query: 275 IAGEESVNL-FLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRT 333
           +    S  +  L  +  RE+    +F  P   +       K  PW  +     AWR G+T
Sbjct: 304 VKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKT 363

Query: 334 GYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 365
           GYP +DA M +L   GW+H   R  V+ F  +
Sbjct: 364 GYPWIDAIMVQLLKWGWMHHLARHCVACFLTR 395


>AT5G24850.1 | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538016
           REVERSE LENGTH=526
          Length = 526

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 16/127 (12%)

Query: 244 LSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHPY 303
            SP L FG +S + ++  V+        E       S    L  +  R+Y R++S     
Sbjct: 289 FSPWLAFGCISPRFIYEEVQ------RYEKERVANNSTYWVLFELIWRDYFRFLSIKCGN 342

Query: 304 SHERPLLGHLKF-----FPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 358
           S     L HL         W  ++  F++WR  +TGYPL+DA M+EL  TG++ +R R +
Sbjct: 343 S-----LFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQI 397

Query: 359 VSSFFVK 365
           V SF V+
Sbjct: 398 VCSFLVR 404