Miyakogusa Predicted Gene

Lj5g3v0875710.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0875710.1 tr|Q8H2U6|Q8H2U6_ORYSJ Os07g0661700 protein
OS=Oryza sativa subsp. japonica GN=P0453E03.109 PE=4
SV=,52.81,0.00000000000001,coiled-coil,NULL,CUFF.54141.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57320.1 | Symbols:  | unknown protein; Has 30 Blast hits to ...    82   6e-17
AT3G57320.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    46   6e-06

>AT3G57320.1 | Symbols:  | unknown protein; Has 30 Blast hits to 30
           proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:21210082-21210672 FORWARD LENGTH=102
          Length = 102

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 67/94 (71%), Gaps = 7/94 (7%)

Query: 14  LKPFYQRASEAEDRLSRLEAAFNSRK----DTGNEEESKVINDLQSKLKDANAELISEKE 69
           LKPF+ RA+EA++RL++LEAA  S K    D    EE+K    LQSKL++ANA +  E+ 
Sbjct: 11  LKPFFHRATEAQERLAKLEAALASTKTDIPDAKLVEENK---QLQSKLEEANATVKQEQT 67

Query: 70  KVQMLAAENEKLQNRIIHLVRALKDADLKLEQVS 103
           KV+ L  EN K + RI+HLVRALKDAD KLE++S
Sbjct: 68  KVKDLTIENAKHKYRILHLVRALKDADQKLERLS 101


>AT3G57320.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: 22 plant
          structures; EXPRESSED DURING: 13 growth stages; Has 17
          Blast hits to 17 proteins in 7 species: Archae - 0;
          Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr3:21210082-21210571 FORWARD LENGTH=78
          Length = 78

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 7/62 (11%)

Query: 14 LKPFYQRASEAEDRLSRLEAAFNSRK----DTGNEEESKVINDLQSKLKDANAELISEKE 69
          LKPF+ RA+EA++RL++LEAA  S K    D    EE+K    LQSKL++ANA +  E+ 
Sbjct: 11 LKPFFHRATEAQERLAKLEAALASTKTDIPDAKLVEENK---QLQSKLEEANATVKQEQT 67

Query: 70 KV 71
          K 
Sbjct: 68 KF 69