Miyakogusa Predicted Gene

Lj5g3v0866920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0866920.1 Non Chatacterized Hit- tr|B4FT43|B4FT43_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,63.89,9e-19,HOMEOBOX_2,Homeodomain; Homeobox,Homeodomain;
coiled-coil,NULL; no description,Homeodomain-like;
Hom,NODE_59246_length_311_cov_30.212219.path2.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18380.2 | Symbols:  | sequence-specific DNA binding transcri...   122   7e-29
AT3G18380.1 | Symbols:  | sequence-specific DNA binding transcri...   122   7e-29
AT3G18380.3 | Symbols:  | sequence-specific DNA binding transcri...   121   8e-29

>AT3G18380.2 | Symbols:  | sequence-specific DNA binding
          transcription factors;sequence-specific DNA binding |
          chr3:6311002-6313181 REVERSE LENGTH=349
          Length = 349

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRF   EV EMEAIL +HN AMP R +L  LA+KFSESP+RKGK+ VQ 
Sbjct: 1  MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60

Query: 61 KQVWNWFQNKRY 72
          KQ+WNWFQN+RY
Sbjct: 61 KQIWNWFQNRRY 72


>AT3G18380.1 | Symbols:  | sequence-specific DNA binding
          transcription factors;sequence-specific DNA binding |
          chr3:6311002-6313181 REVERSE LENGTH=348
          Length = 348

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRF   EV EMEAIL +HN AMP R +L  LA+KFSESP+RKGK+ VQ 
Sbjct: 1  MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60

Query: 61 KQVWNWFQNKRY 72
          KQ+WNWFQN+RY
Sbjct: 61 KQIWNWFQNRRY 72


>AT3G18380.3 | Symbols:  | sequence-specific DNA binding
          transcription factors;sequence-specific DNA binding |
          chr3:6311002-6313181 REVERSE LENGTH=346
          Length = 346

 Score =  121 bits (304), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRF   EV EMEAIL +HN AMP R +L  LA+KFSESP+RKGK+ VQ 
Sbjct: 1  MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60

Query: 61 KQVWNWFQNKRY 72
          KQ+WNWFQN+RY
Sbjct: 61 KQIWNWFQNRRY 72