Miyakogusa Predicted Gene

Lj5g3v0845680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0845680.1 Non Chatacterized Hit- tr|C6T2Q7|C6T2Q7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32174 PE,64.56,2e-16,
,NODE_47039_length_881_cov_189.098755.path2.1
         (76 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    49   7e-07

>AT2G35900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: nucleus;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
           growth stages; Has 32 Blast hits to 32 proteins in 12
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:15070203-15071540 REVERSE
           LENGTH=192
          Length = 192

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 15/83 (18%)

Query: 1   MERSLFGGVSRFFDAAEEMKNGFFDVFGNVLDAESPSSSSMRRGIPIEEY-------NRQ 53
           +ER    G+  FFDAAEEM +  FD+ G+      PS+   R GIPIE +       N +
Sbjct: 118 IERHFLSGMKSFFDAAEEMTSSLFDIMGD----HHPSTR--RGGIPIENHPKVEEHRNDE 171

Query: 54  EASPKPQEKEPVDTDFAALAKDV 76
            A  +P     +  D + LAKDV
Sbjct: 172 TAPTRPHSSGEI--DLSGLAKDV 192