Miyakogusa Predicted Gene

Lj5g3v0844480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0844480.1 Non Chatacterized Hit- tr|I1H3M4|I1H3M4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,48.48,3e-18,E1_DerP2_DerF2,MD-2-related lipid-recognition; no
description,NULL; Domain involved in innate
immuni,NODE_45059_length_496_cov_175.022171.path2.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11780.2 | Symbols:  | MD-2-related lipid recognition domain-...   152   4e-38
AT3G11780.1 | Symbols:  | MD-2-related lipid recognition domain-...   152   5e-38
AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily prote...   144   1e-35
AT3G44100.1 | Symbols:  | MD-2-related lipid recognition domain-...   108   6e-25
AT2G16005.1 | Symbols:  | MD-2-related lipid recognition domain-...    54   2e-08

>AT3G11780.2 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=171
          Length = 171

 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 87/111 (78%)

Query: 6   FNLLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQ 65
           F+ L  S   L+     ATDVHYCD   +Y+V+V+GV+I+P P+ARG+PATF I+A T  
Sbjct: 7   FSSLAISYFLLVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDT 66

Query: 66  ALSGGKLVIDVSYFGWHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTP 116
            +S GKLVI+VSYFGWH++SETHDLC ET CPV+ G+F++AHSQVLPG+TP
Sbjct: 67  EISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTP 117


>AT3G11780.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           | chr3:3724326-3725476 REVERSE LENGTH=153
          Length = 153

 Score =  152 bits (383), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 87/111 (78%)

Query: 6   FNLLFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQ 65
           F+ L  S   L+     ATDVHYCD   +Y+V+V+GV+I+P P+ARG+PATF I+A T  
Sbjct: 7   FSSLAISYFLLVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDT 66

Query: 66  ALSGGKLVIDVSYFGWHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTP 116
            +S GKLVI+VSYFGWH++SETHDLC ET CPV+ G+F++AHSQVLPG+TP
Sbjct: 67  EISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTP 117


>AT5G06480.1 | Symbols:  | Immunoglobulin E-set superfamily protein
           | chr5:1976219-1977231 REVERSE LENGTH=153
          Length = 153

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 62/94 (65%), Positives = 82/94 (87%)

Query: 23  ATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALSGGKLVIDVSYFGWH 82
           A DVHYC++ A+Y+V+VK V+ISP+P+A G+PATF+I+A T + +S GKLVI+VSYFGWH
Sbjct: 24  AIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWH 83

Query: 83  VYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTP 116
           V+SETHDLC ET CP+  G+F++AHSQVLPG+TP
Sbjct: 84  VHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTP 117


>AT3G44100.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein | chr3:15866162-15867273
           REVERSE LENGTH=152
          Length = 152

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 23  ATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALSGGKLVIDVSYFGWH 82
           AT   YCDK+ D  V+V GV+ISPDPV  G  ATF I  +T + +SGGK+VI V Y G  
Sbjct: 24  ATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIP 82

Query: 83  VYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTP 116
           V++ETHDLC ET CPV+ G+FV++HSQ LP  TP
Sbjct: 83  VHTETHDLCDETACPVAPGSFVLSHSQTLPSITP 116


>AT2G16005.1 | Symbols:  | MD-2-related lipid recognition
           domain-containing protein | chr2:6959347-6960135 REVERSE
           LENGTH=160
          Length = 160

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 9   LFFSTLCLLHAFATATDVHYCDKKADYDVEVKGVEISPDPVARGQPATFSIAAATSQALS 68
           LFFS       F T      CD   +Y ++V  VEISPDPV R      +I   T++ +S
Sbjct: 16  LFFSPALCGPKFQT------CDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNKEIS 69

Query: 69  GGKLV-IDVSYFGWHVYSETHDLCGETPCPVSAGNFVIAHSQVLPGFTP 116
            G  V + ++   + V ++++ LC  T CPV+ G  V+    +   FTP
Sbjct: 70  DGVTVNLKLAVGMFPVSTKSYSLCDITACPVAPGPIVLTLPNI---FTP 115