Miyakogusa Predicted Gene

Lj5g3v0841140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0841140.1 Non Chatacterized Hit- tr|D8RXI2|D8RXI2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.37,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.54051.1
         (176 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   227   4e-60
AT3G11800.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   206   5e-54
AT2G15910.1 | Symbols:  | CSL zinc finger domain-containing prot...   160   3e-40
AT3G48630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   3e-14

>AT3G44150.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G11800.1);
           Has 76 Blast hits to 75 proteins in 19 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr3:15887617-15888728 FORWARD LENGTH=246
          Length = 246

 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/154 (70%), Positives = 127/154 (82%), Gaps = 3/154 (1%)

Query: 24  AGDTNRAFSPCSDARVQRSDGFTFGIAFASKDKFFYSNNSTLQLSPCDARLSLSNANSQV 83
           +G+TN  +SPCSD R+QRSDGFTFGIAF+S+  FF   N T+ LSPCD RLSL+  NSQ 
Sbjct: 28  SGNTNTIYSPCSDTRIQRSDGFTFGIAFSSRPSFFI--NQTVLLSPCDRRLSLAAMNSQF 85

Query: 84  SVFRPKVDEISILTVNSSSFVADLYG-YMVAFAGRKYAARSPPAFVANSTYTVTSFTLVL 142
           SVFRPK+DEIS+L++N+S+F  D YG YMVAFAGRKYAARS PAF+ANST+ VTSFTLV+
Sbjct: 86  SVFRPKIDEISLLSINTSAFFPDNYGGYMVAFAGRKYAARSIPAFIANSTFIVTSFTLVM 145

Query: 143 EFKKGRLQNLYWKRDGCSKCSSNSKAVCLNNQDC 176
           EF+KGRLQNLYWKRDGC+ C  N   VCLN QDC
Sbjct: 146 EFQKGRLQNLYWKRDGCASCKGNQNFVCLNKQDC 179


>AT3G11800.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 15 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G44150.1);
           Has 74 Blast hits to 73 proteins in 18 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr3:3726154-3727562 FORWARD LENGTH=246
          Length = 246

 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 126/160 (78%), Gaps = 5/160 (3%)

Query: 22  TEAGDTNRAFSPCSDARVQRSDGFTFGIAFASKDKFFYSNNS-TLQLSPCDARLSLSNAN 80
           TEAGD N+ +SPCSD+ V   DGFTFGIAFA+KD FF +N S ++Q SPCD R    N N
Sbjct: 20  TEAGDNNQVYSPCSDSTVAIGDGFTFGIAFAAKDSFFSTNRSKSVQYSPCDHRHLSLNGN 79

Query: 81  SQVSVFRPKVDEISILTVN---SSSFVADL-YGYMVAFAGRKYAARSPPAFVANSTYTVT 136
           S+V+VFRPKVDEI++LT+N   SSSF  D   GYMVAFAG KYAARS P  VA+S + VT
Sbjct: 80  SEVAVFRPKVDEITLLTINTSSSSSFRPDASKGYMVAFAGAKYAARSLPIMVADSNHIVT 139

Query: 137 SFTLVLEFKKGRLQNLYWKRDGCSKCSSNSKAVCLNNQDC 176
           SFTLVLEF+KGRL+N++WK+DGCSKCS +SK VCLN ++C
Sbjct: 140 SFTLVLEFQKGRLENMFWKKDGCSKCSGDSKFVCLNKEEC 179


>AT2G15910.1 | Symbols:  | CSL zinc finger domain-containing protein
           | chr2:6932917-6935333 REVERSE LENGTH=367
          Length = 367

 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 112/165 (67%), Gaps = 15/165 (9%)

Query: 24  AGDTNRAFSPCSDARVQRSDGFTFGIAFASKDKFFYSNNSTLQLSPCDARLSLSNANSQV 83
           A D N  +SPCSD ++ + DGFT GIA +SK+ FF      +QLSPCD RL L+   +Q+
Sbjct: 142 AADNNPVYSPCSDTQISKGDGFTIGIAISSKEAFFLDQ---VQLSPCDTRLGLAAKMAQL 198

Query: 84  SVFRPKVDEISILTVNSSSF-VADLYGYMVAFAGRKYAARSPPAFVANSTYTVTSFT--- 139
           ++FRPKVDEIS+L++++S F  ++  G+MV FAG KYAARS P  VA+ + T+T+FT   
Sbjct: 199 ALFRPKVDEISLLSIDTSKFNPSEAGGFMVGFAGSKYAARSYPVKVADGSNTITAFTLVM 258

Query: 140 ------LVLEFKKGRLQNLYWKRDGCSKC--SSNSKAVCLNNQDC 176
                 LVLEF+KG LQNL+WK  GC  C  + +S +VCLN  DC
Sbjct: 259 KLTLSPLVLEFQKGVLQNLFWKSFGCDLCKGTGSSSSVCLNGTDC 303


>AT3G48630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G44150.1); Has 64 Blast hits to 64 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:18018234-18018782 REVERSE
           LENGTH=128
          Length = 128

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 42/63 (66%)

Query: 110 YMVAFAGRKYAARSPPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKRDGCSKCSSNSKAV 169
           Y V   G +  +   PAF+ANST+ VTSFT V+EF+KGRLQNLYWKRD C+K      AV
Sbjct: 2   YNVGTRGSEIRSEVDPAFIANSTFIVTSFTWVMEFQKGRLQNLYWKRDVCAKAGEVQWAV 61

Query: 170 CLN 172
            L 
Sbjct: 62  VLG 64